Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.35■□□□□ 0.69
CLIP4Q8N3C7 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.34■□□□□ 0.69
CLIP4Q8N3C7 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.34■□□□□ 0.69
CLIP4Q8N3C7 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLIP4Q8N3C7 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLIP4Q8N3C7 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.34■□□□□ 0.69
CLIP4Q8N3C7 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC19.34■□□□□ 0.69
CLIP4Q8N3C7 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CLIP4Q8N3C7 HYI-206ENST00000372434 1025 ntTSL 5 BASIC19.34■□□□□ 0.69
CLIP4Q8N3C7 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.34■□□□□ 0.69
CLIP4Q8N3C7 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CLIP4Q8N3C7 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.34■□□□□ 0.69
CLIP4Q8N3C7 RHOF-204ENST00000537265 699 ntTSL 2 BASIC19.34■□□□□ 0.69
CLIP4Q8N3C7 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.34■□□□□ 0.69
CLIP4Q8N3C7 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLIP4Q8N3C7 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.34■□□□□ 0.69
CLIP4Q8N3C7 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLIP4Q8N3C7 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CLIP4Q8N3C7 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
CLIP4Q8N3C7 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CLIP4Q8N3C7 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CLIP4Q8N3C7 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
CLIP4Q8N3C7 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CLIP4Q8N3C7 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CLIP4Q8N3C7 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.33■□□□□ 0.69
CLIP4Q8N3C7 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.33■□□□□ 0.69
CLIP4Q8N3C7 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CLIP4Q8N3C7 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.33■□□□□ 0.69
CLIP4Q8N3C7 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CLIP4Q8N3C7 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CLIP4Q8N3C7 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLIP4Q8N3C7 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC19.33■□□□□ 0.68
CLIP4Q8N3C7 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLIP4Q8N3C7 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.33■□□□□ 0.68
CLIP4Q8N3C7 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.33■□□□□ 0.68
CLIP4Q8N3C7 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC19.33■□□□□ 0.68
CLIP4Q8N3C7 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
CLIP4Q8N3C7 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.68
CLIP4Q8N3C7 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CLIP4Q8N3C7 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
CLIP4Q8N3C7 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
CLIP4Q8N3C7 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLIP4Q8N3C7 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
CLIP4Q8N3C7 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLIP4Q8N3C7 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
CLIP4Q8N3C7 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLIP4Q8N3C7 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLIP4Q8N3C7 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLIP4Q8N3C7 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.32■□□□□ 0.68
CLIP4Q8N3C7 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
CLIP4Q8N3C7 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLIP4Q8N3C7 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.32■□□□□ 0.68
CLIP4Q8N3C7 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
CLIP4Q8N3C7 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC19.32■□□□□ 0.68
CLIP4Q8N3C7 TPRG1LP1-201ENST00000598702 760 ntBASIC19.32■□□□□ 0.68
CLIP4Q8N3C7 AL354811.1-201ENST00000610286 706 ntBASIC19.32■□□□□ 0.68
CLIP4Q8N3C7 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC19.32■□□□□ 0.68
CLIP4Q8N3C7 MIR6084-201ENST00000622012 110 ntBASIC19.32■□□□□ 0.68
CLIP4Q8N3C7 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLIP4Q8N3C7 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLIP4Q8N3C7 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLIP4Q8N3C7 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLIP4Q8N3C7 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CLIP4Q8N3C7 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CLIP4Q8N3C7 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CLIP4Q8N3C7 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
CLIP4Q8N3C7 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.31■□□□□ 0.68
CLIP4Q8N3C7 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CLIP4Q8N3C7 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLIP4Q8N3C7 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLIP4Q8N3C7 LINC01006-201ENST00000333319 2292 ntBASIC19.31■□□□□ 0.68
CLIP4Q8N3C7 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLIP4Q8N3C7 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
CLIP4Q8N3C7 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLIP4Q8N3C7 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLIP4Q8N3C7 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLIP4Q8N3C7 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CLIP4Q8N3C7 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.31■□□□□ 0.68
CLIP4Q8N3C7 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.31■□□□□ 0.68
CLIP4Q8N3C7 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.31■□□□□ 0.68
CLIP4Q8N3C7 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
CLIP4Q8N3C7 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
CLIP4Q8N3C7 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.3■□□□□ 0.68
CLIP4Q8N3C7 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLIP4Q8N3C7 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLIP4Q8N3C7 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.3■□□□□ 0.68
CLIP4Q8N3C7 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLIP4Q8N3C7 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
CLIP4Q8N3C7 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
CLIP4Q8N3C7 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.3■□□□□ 0.68
CLIP4Q8N3C7 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
CLIP4Q8N3C7 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.3■□□□□ 0.68
CLIP4Q8N3C7 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.3■□□□□ 0.68
CLIP4Q8N3C7 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.3■□□□□ 0.68
CLIP4Q8N3C7 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms