Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC60Q8IWA6 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC60Q8IWA6 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC60Q8IWA6 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
CCDC60Q8IWA6 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC60Q8IWA6 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC23.13■■□□□ 1.29
CCDC60Q8IWA6 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC60Q8IWA6 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC23.13■■□□□ 1.29
CCDC60Q8IWA6 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC23.13■■□□□ 1.29
CCDC60Q8IWA6 AC100791.3-201ENST00000617619 330 ntBASIC23.13■■□□□ 1.29
CCDC60Q8IWA6 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC23.13■■□□□ 1.29
CCDC60Q8IWA6 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC60Q8IWA6 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC60Q8IWA6 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
CCDC60Q8IWA6 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC60Q8IWA6 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC60Q8IWA6 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC60Q8IWA6 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC23.13■■□□□ 1.29
CCDC60Q8IWA6 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC23.13■■□□□ 1.29
CCDC60Q8IWA6 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
CCDC60Q8IWA6 BID-212ENST00000614949 1988 ntTSL 5 BASIC23.12■■□□□ 1.29
CCDC60Q8IWA6 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC60Q8IWA6 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC23.12■■□□□ 1.29
CCDC60Q8IWA6 AC116050.2-201ENST00000612102 1779 ntBASIC23.12■■□□□ 1.29
CCDC60Q8IWA6 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC60Q8IWA6 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC60Q8IWA6 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC60Q8IWA6 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC60Q8IWA6 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC23.12■■□□□ 1.29
CCDC60Q8IWA6 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC23.12■■□□□ 1.29
CCDC60Q8IWA6 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC23.12■■□□□ 1.29
CCDC60Q8IWA6 AC083880.1-201ENST00000608266 535 ntBASIC23.12■■□□□ 1.29
CCDC60Q8IWA6 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC23.12■■□□□ 1.29
CCDC60Q8IWA6 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
CCDC60Q8IWA6 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC60Q8IWA6 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC60Q8IWA6 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
CCDC60Q8IWA6 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC23.12■■□□□ 1.29
CCDC60Q8IWA6 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC23.11■■□□□ 1.29
CCDC60Q8IWA6 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC60Q8IWA6 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC60Q8IWA6 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC23.11■■□□□ 1.29
CCDC60Q8IWA6 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC60Q8IWA6 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC23.11■■□□□ 1.29
CCDC60Q8IWA6 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
CCDC60Q8IWA6 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC23.11■■□□□ 1.29
CCDC60Q8IWA6 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC60Q8IWA6 ABHD17AP1-201ENST00000358206 933 ntBASIC23.11■■□□□ 1.29
CCDC60Q8IWA6 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC23.11■■□□□ 1.29
CCDC60Q8IWA6 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC60Q8IWA6 DUSP5P2-201ENST00000426873 1033 ntBASIC23.11■■□□□ 1.29
CCDC60Q8IWA6 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC23.11■■□□□ 1.29
CCDC60Q8IWA6 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC23.11■■□□□ 1.29
CCDC60Q8IWA6 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC23.11■■□□□ 1.29
CCDC60Q8IWA6 CYP2T3P-201ENST00000601990 817 ntBASIC23.11■■□□□ 1.29
CCDC60Q8IWA6 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC23.11■■□□□ 1.29
CCDC60Q8IWA6 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC60Q8IWA6 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC60Q8IWA6 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC23.11■■□□□ 1.29
CCDC60Q8IWA6 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC60Q8IWA6 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CCDC60Q8IWA6 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC23.1■■□□□ 1.29
CCDC60Q8IWA6 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC60Q8IWA6 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC23.1■■□□□ 1.29
CCDC60Q8IWA6 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC23.1■■□□□ 1.29
CCDC60Q8IWA6 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC60Q8IWA6 EXOC3-AS1-202ENST00000623673 1663 ntBASIC23.1■■□□□ 1.29
CCDC60Q8IWA6 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC60Q8IWA6 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC60Q8IWA6 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC60Q8IWA6 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC60Q8IWA6 AC091874.3-201ENST00000512672 1195 ntBASIC23.1■■□□□ 1.29
CCDC60Q8IWA6 BET1L-207ENST00000529614 560 ntTSL 5 BASIC23.1■■□□□ 1.29
CCDC60Q8IWA6 MIR4651-201ENST00000582622 73 ntBASIC23.1■■□□□ 1.29
CCDC60Q8IWA6 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
CCDC60Q8IWA6 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC23.1■■□□□ 1.29
CCDC60Q8IWA6 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC60Q8IWA6 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC23.1■■□□□ 1.29
CCDC60Q8IWA6 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC23.1■■□□□ 1.29
CCDC60Q8IWA6 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CCDC60Q8IWA6 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC23.1■■□□□ 1.29
CCDC60Q8IWA6 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
CCDC60Q8IWA6 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC23.09■■□□□ 1.29
CCDC60Q8IWA6 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC60Q8IWA6 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC60Q8IWA6 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC60Q8IWA6 OR2A1-AS1-201ENST00000462305 773 ntBASIC23.09■■□□□ 1.29
CCDC60Q8IWA6 RHEB-204ENST00000472642 900 ntTSL 3 BASIC23.09■■□□□ 1.29
CCDC60Q8IWA6 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC23.09■■□□□ 1.29
CCDC60Q8IWA6 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC23.09■■□□□ 1.29
CCDC60Q8IWA6 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC23.09■■□□□ 1.29
CCDC60Q8IWA6 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
CCDC60Q8IWA6 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC23.09■■□□□ 1.29
CCDC60Q8IWA6 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC60Q8IWA6 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC60Q8IWA6 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC23.09■■□□□ 1.29
CCDC60Q8IWA6 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC60Q8IWA6 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
CCDC60Q8IWA6 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CCDC60Q8IWA6 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms