Protein–RNA interactions for Protein: Q8IVM0

CCDC50, Coiled-coil domain-containing protein 50, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50Q8IVM0 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC50Q8IVM0 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
CCDC50Q8IVM0 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC50Q8IVM0 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC50Q8IVM0 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC50Q8IVM0 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC50Q8IVM0 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC50Q8IVM0 AL031432.3-201ENST00000607698 485 ntBASIC21.81■■□□□ 1.08
CCDC50Q8IVM0 RALB-208ENST00000631312 311 ntTSL 5 BASIC21.81■■□□□ 1.08
CCDC50Q8IVM0 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
CCDC50Q8IVM0 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC50Q8IVM0 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC50Q8IVM0 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CCDC50Q8IVM0 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.8■■□□□ 1.08
CCDC50Q8IVM0 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC50Q8IVM0 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC50Q8IVM0 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC50Q8IVM0 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.8■■□□□ 1.08
CCDC50Q8IVM0 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.8■■□□□ 1.08
CCDC50Q8IVM0 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC50Q8IVM0 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC50Q8IVM0 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
CCDC50Q8IVM0 AC006128.1-201ENST00000624704 1661 ntBASIC21.8■■□□□ 1.08
CCDC50Q8IVM0 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC50Q8IVM0 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC50Q8IVM0 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC50Q8IVM0 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC50Q8IVM0 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC50Q8IVM0 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.8■■□□□ 1.08
CCDC50Q8IVM0 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC50Q8IVM0 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CCDC50Q8IVM0 LINC01006-201ENST00000333319 2292 ntBASIC21.8■■□□□ 1.08
CCDC50Q8IVM0 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.8■■□□□ 1.08
CCDC50Q8IVM0 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
CCDC50Q8IVM0 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
CCDC50Q8IVM0 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC50Q8IVM0 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC50Q8IVM0 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.79■■□□□ 1.08
CCDC50Q8IVM0 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.79■■□□□ 1.08
CCDC50Q8IVM0 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.79■■□□□ 1.08
CCDC50Q8IVM0 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.79■■□□□ 1.08
CCDC50Q8IVM0 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC50Q8IVM0 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC50Q8IVM0 PLK5-205ENST00000642079 1969 ntBASIC21.79■■□□□ 1.08
CCDC50Q8IVM0 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC50Q8IVM0 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
CCDC50Q8IVM0 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.78■■□□□ 1.08
CCDC50Q8IVM0 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
CCDC50Q8IVM0 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC50Q8IVM0 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC50Q8IVM0 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.78■■□□□ 1.08
CCDC50Q8IVM0 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC50Q8IVM0 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC50Q8IVM0 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC50Q8IVM0 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC50Q8IVM0 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CCDC50Q8IVM0 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC50Q8IVM0 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.77■■□□□ 1.08
CCDC50Q8IVM0 AL391422.3-201ENST00000603791 2761 ntBASIC21.77■■□□□ 1.08
CCDC50Q8IVM0 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC50Q8IVM0 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
CCDC50Q8IVM0 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC50Q8IVM0 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.77■■□□□ 1.08
CCDC50Q8IVM0 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.77■■□□□ 1.08
CCDC50Q8IVM0 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.77■■□□□ 1.08
CCDC50Q8IVM0 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC50Q8IVM0 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC50Q8IVM0 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.77■■□□□ 1.08
CCDC50Q8IVM0 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.77■■□□□ 1.08
CCDC50Q8IVM0 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.77■■□□□ 1.08
CCDC50Q8IVM0 AC012414.1-201ENST00000556676 535 ntBASIC21.77■■□□□ 1.08
CCDC50Q8IVM0 AL139246.5-201ENST00000606645 996 ntBASIC21.77■■□□□ 1.08
CCDC50Q8IVM0 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21.77■■□□□ 1.08
CCDC50Q8IVM0 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
CCDC50Q8IVM0 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
CCDC50Q8IVM0 FEM1AP1-201ENST00000431297 1995 ntBASIC21.77■■□□□ 1.08
CCDC50Q8IVM0 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC50Q8IVM0 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CCDC50Q8IVM0 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
CCDC50Q8IVM0 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.77■■□□□ 1.07
CCDC50Q8IVM0 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.77■■□□□ 1.07
CCDC50Q8IVM0 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC50Q8IVM0 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC50Q8IVM0 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC50Q8IVM0 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC50Q8IVM0 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC50Q8IVM0 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC50Q8IVM0 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC50Q8IVM0 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC50Q8IVM0 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.76■■□□□ 1.07
CCDC50Q8IVM0 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.76■■□□□ 1.07
CCDC50Q8IVM0 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC50Q8IVM0 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.76■■□□□ 1.07
CCDC50Q8IVM0 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC50Q8IVM0 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC21.76■■□□□ 1.07
CCDC50Q8IVM0 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CCDC50Q8IVM0 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC50Q8IVM0 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CCDC50Q8IVM0 AC121338.2-201ENST00000622535 1744 ntBASIC21.75■■□□□ 1.07
CCDC50Q8IVM0 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms