Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00643Q86TS7 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00643Q86TS7 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
LINC00643Q86TS7 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
LINC00643Q86TS7 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00643Q86TS7 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00643Q86TS7 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC13□□□□□ -0.33
LINC00643Q86TS7 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC13□□□□□ -0.33
LINC00643Q86TS7 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC13□□□□□ -0.33
LINC00643Q86TS7 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00643Q86TS7 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC13□□□□□ -0.33
LINC00643Q86TS7 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00643Q86TS7 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC13□□□□□ -0.33
LINC00643Q86TS7 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC13□□□□□ -0.33
LINC00643Q86TS7 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00643Q86TS7 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC13□□□□□ -0.33
LINC00643Q86TS7 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC13□□□□□ -0.33
LINC00643Q86TS7 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
LINC00643Q86TS7 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC13□□□□□ -0.33
LINC00643Q86TS7 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC13□□□□□ -0.33
LINC00643Q86TS7 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
LINC00643Q86TS7 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
LINC00643Q86TS7 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
LINC00643Q86TS7 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC13□□□□□ -0.33
LINC00643Q86TS7 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC13□□□□□ -0.33
LINC00643Q86TS7 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
LINC00643Q86TS7 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 AC006128.1-201ENST00000624704 1661 ntBASIC12.99□□□□□ -0.33
LINC00643Q86TS7 EI24-204ENST00000527235 1625 ntTSL 5 BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
LINC00643Q86TS7 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC12.98□□□□□ -0.33
LINC00643Q86TS7 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms