Protein–RNA interactions for Protein: Q53F19

NCBP3, Nuclear cap-binding protein subunit 3, humanhuman

Known RBP Predictions only

Length 620 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NCBP3Q53F19 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC27.17■■□□□ 1.94
NCBP3Q53F19 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
NCBP3Q53F19 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
NCBP3Q53F19 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
NCBP3Q53F19 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
NCBP3Q53F19 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC27.16■■□□□ 1.94
NCBP3Q53F19 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC27.16■■□□□ 1.94
NCBP3Q53F19 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC27.16■■□□□ 1.94
NCBP3Q53F19 AC016769.1-201ENST00000409132 1010 ntBASIC27.16■■□□□ 1.94
NCBP3Q53F19 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC27.16■■□□□ 1.94
NCBP3Q53F19 PARL-206ENST00000435888 1098 ntTSL 5 BASIC27.16■■□□□ 1.94
NCBP3Q53F19 CNN2P6-201ENST00000439038 900 ntBASIC27.16■■□□□ 1.94
NCBP3Q53F19 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC27.16■■□□□ 1.94
NCBP3Q53F19 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
NCBP3Q53F19 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC27.16■■□□□ 1.94
NCBP3Q53F19 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC27.16■■□□□ 1.94
NCBP3Q53F19 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
NCBP3Q53F19 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
NCBP3Q53F19 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC27.15■■□□□ 1.94
NCBP3Q53F19 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC27.15■■□□□ 1.94
NCBP3Q53F19 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
NCBP3Q53F19 METTL26-203ENST00000397664 604 ntTSL 2 BASIC27.15■■□□□ 1.94
NCBP3Q53F19 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC27.15■■□□□ 1.94
NCBP3Q53F19 FAM21FP-204ENST00000608637 956 ntBASIC27.15■■□□□ 1.94
NCBP3Q53F19 AC011767.1-201ENST00000617410 1153 ntBASIC27.15■■□□□ 1.94
NCBP3Q53F19 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC27.15■■□□□ 1.94
NCBP3Q53F19 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
NCBP3Q53F19 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC27.15■■□□□ 1.94
NCBP3Q53F19 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC27.15■■□□□ 1.94
NCBP3Q53F19 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
NCBP3Q53F19 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
NCBP3Q53F19 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC27.14■■□□□ 1.94
NCBP3Q53F19 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC27.14■■□□□ 1.94
NCBP3Q53F19 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC27.14■■□□□ 1.94
NCBP3Q53F19 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC27.14■■□□□ 1.94
NCBP3Q53F19 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
NCBP3Q53F19 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC27.14■■□□□ 1.94
NCBP3Q53F19 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC27.14■■□□□ 1.94
NCBP3Q53F19 PARP1-210ENST00000629232 477 ntTSL 5 BASIC27.14■■□□□ 1.94
NCBP3Q53F19 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
NCBP3Q53F19 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC27.14■■□□□ 1.94
NCBP3Q53F19 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
NCBP3Q53F19 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC27.14■■□□□ 1.93
NCBP3Q53F19 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC27.14■■□□□ 1.93
NCBP3Q53F19 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC27.14■■□□□ 1.93
NCBP3Q53F19 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
NCBP3Q53F19 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
NCBP3Q53F19 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
NCBP3Q53F19 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
NCBP3Q53F19 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC27.13■■□□□ 1.93
NCBP3Q53F19 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC27.13■■□□□ 1.93
NCBP3Q53F19 PLLP-204ENST00000569059 665 ntTSL 3 BASIC27.13■■□□□ 1.93
NCBP3Q53F19 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
NCBP3Q53F19 AL591742.1-201ENST00000604433 565 ntBASIC27.13■■□□□ 1.93
NCBP3Q53F19 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
NCBP3Q53F19 BID-214ENST00000617586 542 ntTSL 5 BASIC27.13■■□□□ 1.93
NCBP3Q53F19 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC27.13■■□□□ 1.93
NCBP3Q53F19 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC27.13■■□□□ 1.93
NCBP3Q53F19 PLK5-205ENST00000642079 1969 ntBASIC27.13■■□□□ 1.93
NCBP3Q53F19 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
NCBP3Q53F19 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC27.13■■□□□ 1.93
NCBP3Q53F19 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
NCBP3Q53F19 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
NCBP3Q53F19 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC27.12■■□□□ 1.93
NCBP3Q53F19 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC27.12■■□□□ 1.93
NCBP3Q53F19 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC27.12■■□□□ 1.93
NCBP3Q53F19 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC27.12■■□□□ 1.93
NCBP3Q53F19 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
NCBP3Q53F19 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC27.12■■□□□ 1.93
NCBP3Q53F19 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
NCBP3Q53F19 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC27.12■■□□□ 1.93
NCBP3Q53F19 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC27.12■■□□□ 1.93
NCBP3Q53F19 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC27.12■■□□□ 1.93
NCBP3Q53F19 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC27.12■■□□□ 1.93
NCBP3Q53F19 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC27.12■■□□□ 1.93
NCBP3Q53F19 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
NCBP3Q53F19 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
NCBP3Q53F19 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC27.11■■□□□ 1.93
NCBP3Q53F19 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
NCBP3Q53F19 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
NCBP3Q53F19 GLI3-203ENST00000437480 451 ntTSL 2 BASIC27.11■■□□□ 1.93
NCBP3Q53F19 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
NCBP3Q53F19 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC27.11■■□□□ 1.93
NCBP3Q53F19 LINC02281-201ENST00000549013 375 ntTSL 3 BASIC27.11■■□□□ 1.93
NCBP3Q53F19 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC27.11■■□□□ 1.93
NCBP3Q53F19 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC27.11■■□□□ 1.93
NCBP3Q53F19 MDK-213ENST00000617138 635 ntTSL 2 BASIC27.11■■□□□ 1.93
NCBP3Q53F19 AC231657.2-201ENST00000624556 255 ntBASIC27.11■■□□□ 1.93
NCBP3Q53F19 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
NCBP3Q53F19 AC006128.1-201ENST00000624704 1661 ntBASIC27.11■■□□□ 1.93
NCBP3Q53F19 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC27.11■■□□□ 1.93
NCBP3Q53F19 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC27.1■■□□□ 1.93
NCBP3Q53F19 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC27.1■■□□□ 1.93
NCBP3Q53F19 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC27.1■■□□□ 1.93
NCBP3Q53F19 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC27.1■■□□□ 1.93
NCBP3Q53F19 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
NCBP3Q53F19 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
NCBP3Q53F19 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC27.1■■□□□ 1.93
NCBP3Q53F19 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC27.1■■□□□ 1.93
NCBP3Q53F19 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms