Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
YBX1P67809 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
YBX1P67809 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.22■□□□□ 0.83
YBX1P67809 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
YBX1P67809 AC092667.1-201ENST00000434301 2586 ntBASIC20.22■□□□□ 0.83
YBX1P67809 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
YBX1P67809 LINC01521-201ENST00000504184 1943 ntBASIC20.22■□□□□ 0.83
YBX1P67809 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
YBX1P67809 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
YBX1P67809 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
YBX1P67809 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
YBX1P67809 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.22■□□□□ 0.83
YBX1P67809 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
YBX1P67809 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
YBX1P67809 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.22■□□□□ 0.83
YBX1P67809 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
YBX1P67809 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
YBX1P67809 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
YBX1P67809 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.22■□□□□ 0.83
YBX1P67809 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.22■□□□□ 0.83
YBX1P67809 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.22■□□□□ 0.83
YBX1P67809 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
YBX1P67809 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.21■□□□□ 0.83
YBX1P67809 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
YBX1P67809 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
YBX1P67809 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
YBX1P67809 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
YBX1P67809 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
YBX1P67809 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
YBX1P67809 AC004911.1-201ENST00000416316 871 ntBASIC20.21■□□□□ 0.83
YBX1P67809 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
YBX1P67809 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.21■□□□□ 0.83
YBX1P67809 AC011767.1-201ENST00000617410 1153 ntBASIC20.21■□□□□ 0.83
YBX1P67809 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
YBX1P67809 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
YBX1P67809 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
YBX1P67809 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
YBX1P67809 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.2■□□□□ 0.82
YBX1P67809 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
YBX1P67809 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
YBX1P67809 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
YBX1P67809 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
YBX1P67809 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.2■□□□□ 0.82
YBX1P67809 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
YBX1P67809 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
YBX1P67809 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
YBX1P67809 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
YBX1P67809 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC20.2■□□□□ 0.82
YBX1P67809 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.2■□□□□ 0.82
YBX1P67809 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.2■□□□□ 0.82
YBX1P67809 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.2■□□□□ 0.82
YBX1P67809 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.2■□□□□ 0.82
YBX1P67809 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.2■□□□□ 0.82
YBX1P67809 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.2■□□□□ 0.82
YBX1P67809 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
YBX1P67809 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
YBX1P67809 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
YBX1P67809 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
YBX1P67809 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
YBX1P67809 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
YBX1P67809 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
YBX1P67809 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
YBX1P67809 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
YBX1P67809 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
YBX1P67809 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
YBX1P67809 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.19■□□□□ 0.82
YBX1P67809 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
YBX1P67809 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
YBX1P67809 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.19■□□□□ 0.82
YBX1P67809 AC016769.1-201ENST00000409132 1010 ntBASIC20.19■□□□□ 0.82
YBX1P67809 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.19■□□□□ 0.82
YBX1P67809 AC008175.2-201ENST00000612840 297 ntBASIC20.19■□□□□ 0.82
YBX1P67809 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.19■□□□□ 0.82
YBX1P67809 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.19■□□□□ 0.82
YBX1P67809 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
YBX1P67809 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
YBX1P67809 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
YBX1P67809 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
YBX1P67809 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
YBX1P67809 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
YBX1P67809 FEM1AP1-201ENST00000431297 1995 ntBASIC20.18■□□□□ 0.82
YBX1P67809 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
YBX1P67809 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.18■□□□□ 0.82
YBX1P67809 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
YBX1P67809 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.18■□□□□ 0.82
YBX1P67809 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.18■□□□□ 0.82
YBX1P67809 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.18■□□□□ 0.82
YBX1P67809 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.18■□□□□ 0.82
YBX1P67809 AL137784.2-201ENST00000607332 1000 ntBASIC20.18■□□□□ 0.82
YBX1P67809 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.18■□□□□ 0.82
YBX1P67809 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
YBX1P67809 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
YBX1P67809 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.18■□□□□ 0.82
YBX1P67809 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
YBX1P67809 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
YBX1P67809 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
YBX1P67809 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.17■□□□□ 0.82
YBX1P67809 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC20.17■□□□□ 0.82
YBX1P67809 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
YBX1P67809 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms