Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SUMO3P55854 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SUMO3P55854 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SUMO3P55854 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SUMO3P55854 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC18.81■□□□□ 0.6
SUMO3P55854 DUX4L16-201ENST00000555130 1264 ntBASIC18.81■□□□□ 0.6
SUMO3P55854 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC18.81■□□□□ 0.6
SUMO3P55854 AC231657.2-201ENST00000624556 255 ntBASIC18.81■□□□□ 0.6
SUMO3P55854 AC092437.1-201ENST00000624794 1048 ntBASIC18.81■□□□□ 0.6
SUMO3P55854 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
SUMO3P55854 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SUMO3P55854 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SUMO3P55854 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SUMO3P55854 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SUMO3P55854 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SUMO3P55854 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SUMO3P55854 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.8■□□□□ 0.6
SUMO3P55854 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SUMO3P55854 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SUMO3P55854 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC18.8■□□□□ 0.6
SUMO3P55854 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SUMO3P55854 AC007322.3-201ENST00000426526 701 ntBASIC18.8■□□□□ 0.6
SUMO3P55854 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.8■□□□□ 0.6
SUMO3P55854 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SUMO3P55854 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.8■□□□□ 0.6
SUMO3P55854 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.8■□□□□ 0.6
SUMO3P55854 AL591742.1-201ENST00000604433 565 ntBASIC18.8■□□□□ 0.6
SUMO3P55854 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.8■□□□□ 0.6
SUMO3P55854 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SUMO3P55854 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SUMO3P55854 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
SUMO3P55854 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC18.8■□□□□ 0.6
SUMO3P55854 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
SUMO3P55854 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.8■□□□□ 0.6
SUMO3P55854 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.8■□□□□ 0.6
SUMO3P55854 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SUMO3P55854 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SUMO3P55854 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC18.79■□□□□ 0.6
SUMO3P55854 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SUMO3P55854 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SUMO3P55854 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.79■□□□□ 0.6
SUMO3P55854 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
SUMO3P55854 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SUMO3P55854 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18.79■□□□□ 0.6
SUMO3P55854 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SUMO3P55854 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SUMO3P55854 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SUMO3P55854 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SUMO3P55854 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SUMO3P55854 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
SUMO3P55854 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SUMO3P55854 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SUMO3P55854 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC18.78■□□□□ 0.6
SUMO3P55854 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.78■□□□□ 0.6
SUMO3P55854 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SUMO3P55854 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SUMO3P55854 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SUMO3P55854 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC18.78■□□□□ 0.6
SUMO3P55854 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SUMO3P55854 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
SUMO3P55854 PBX1-209ENST00000485769 834 ntTSL 2 BASIC18.78■□□□□ 0.6
SUMO3P55854 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SUMO3P55854 FAM21FP-204ENST00000608637 956 ntBASIC18.78■□□□□ 0.6
SUMO3P55854 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
SUMO3P55854 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
SUMO3P55854 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.78■□□□□ 0.6
SUMO3P55854 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SUMO3P55854 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.78■□□□□ 0.6
SUMO3P55854 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SUMO3P55854 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC18.77■□□□□ 0.6
SUMO3P55854 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SUMO3P55854 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
SUMO3P55854 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SUMO3P55854 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SUMO3P55854 CNN2P6-201ENST00000439038 900 ntBASIC18.77■□□□□ 0.6
SUMO3P55854 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
SUMO3P55854 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC18.77■□□□□ 0.6
SUMO3P55854 IKBKGP1-201ENST00000612193 1073 ntBASIC18.77■□□□□ 0.6
SUMO3P55854 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.77■□□□□ 0.6
SUMO3P55854 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SUMO3P55854 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
SUMO3P55854 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SUMO3P55854 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
SUMO3P55854 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.76■□□□□ 0.59
SUMO3P55854 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.76■□□□□ 0.59
SUMO3P55854 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SUMO3P55854 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.76■□□□□ 0.59
SUMO3P55854 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SUMO3P55854 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SUMO3P55854 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.76■□□□□ 0.59
SUMO3P55854 CASP6-205ENST00000505486 538 ntTSL 4 BASIC18.76■□□□□ 0.59
SUMO3P55854 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.76■□□□□ 0.59
SUMO3P55854 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.76■□□□□ 0.59
SUMO3P55854 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18.76■□□□□ 0.59
SUMO3P55854 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.76■□□□□ 0.59
SUMO3P55854 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.76■□□□□ 0.59
SUMO3P55854 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC18.76■□□□□ 0.59
SUMO3P55854 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.76■□□□□ 0.59
SUMO3P55854 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SUMO3P55854 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms