Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.46■□□□□ 0.71
SOX3P41225 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.46■□□□□ 0.71
SOX3P41225 AL121603.2-201ENST00000557373 2117 ntBASIC19.46■□□□□ 0.71
SOX3P41225 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.46■□□□□ 0.71
SOX3P41225 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SOX3P41225 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
SOX3P41225 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SOX3P41225 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.45■□□□□ 0.7
SOX3P41225 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.45■□□□□ 0.7
SOX3P41225 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SOX3P41225 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.45■□□□□ 0.7
SOX3P41225 CDCA4P2-201ENST00000441182 718 ntBASIC19.45■□□□□ 0.7
SOX3P41225 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.45■□□□□ 0.7
SOX3P41225 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SOX3P41225 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.45■□□□□ 0.7
SOX3P41225 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.45■□□□□ 0.7
SOX3P41225 AC092667.1-201ENST00000434301 2586 ntBASIC19.45■□□□□ 0.7
SOX3P41225 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SOX3P41225 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SOX3P41225 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
SOX3P41225 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SOX3P41225 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX3P41225 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.44■□□□□ 0.7
SOX3P41225 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX3P41225 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX3P41225 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX3P41225 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX3P41225 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX3P41225 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SOX3P41225 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SOX3P41225 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SOX3P41225 SLC7A5P2-201ENST00000553010 536 ntBASIC19.44■□□□□ 0.7
SOX3P41225 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SOX3P41225 AC008175.2-201ENST00000612840 297 ntBASIC19.44■□□□□ 0.7
SOX3P41225 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.44■□□□□ 0.7
SOX3P41225 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX3P41225 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX3P41225 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX3P41225 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX3P41225 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
SOX3P41225 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
SOX3P41225 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SOX3P41225 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
SOX3P41225 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SOX3P41225 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SOX3P41225 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.43■□□□□ 0.7
SOX3P41225 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SOX3P41225 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SOX3P41225 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
SOX3P41225 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SOX3P41225 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SOX3P41225 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
SOX3P41225 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SOX3P41225 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.43■□□□□ 0.7
SOX3P41225 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SOX3P41225 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.43■□□□□ 0.7
SOX3P41225 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.43■□□□□ 0.7
SOX3P41225 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.43■□□□□ 0.7
SOX3P41225 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
SOX3P41225 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SOX3P41225 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SOX3P41225 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.43■□□□□ 0.7
SOX3P41225 RAP2CP1-201ENST00000605103 478 ntBASIC19.43■□□□□ 0.7
SOX3P41225 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SOX3P41225 Z98882.1-201ENST00000622160 2253 ntBASIC19.42■□□□□ 0.7
SOX3P41225 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SOX3P41225 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SOX3P41225 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SOX3P41225 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SOX3P41225 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SOX3P41225 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SOX3P41225 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SOX3P41225 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SOX3P41225 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SOX3P41225 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SOX3P41225 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.42■□□□□ 0.7
SOX3P41225 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.42■□□□□ 0.7
SOX3P41225 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.42■□□□□ 0.7
SOX3P41225 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SOX3P41225 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
SOX3P41225 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SOX3P41225 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SOX3P41225 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SOX3P41225 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SOX3P41225 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.42■□□□□ 0.7
SOX3P41225 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.42■□□□□ 0.7
SOX3P41225 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.42■□□□□ 0.7
SOX3P41225 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SOX3P41225 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SOX3P41225 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX3P41225 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.41■□□□□ 0.7
SOX3P41225 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX3P41225 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SOX3P41225 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX3P41225 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SOX3P41225 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC19.41■□□□□ 0.7
SOX3P41225 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
SOX3P41225 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.41■□□□□ 0.7
SOX3P41225 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.41■□□□□ 0.7
SOX3P41225 AC026185.1-201ENST00000445748 174 ntBASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms