Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PTPN4P29074 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.73■□□□□ 0.91
PTPN4P29074 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PTPN4P29074 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.73■□□□□ 0.91
PTPN4P29074 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.73■□□□□ 0.91
PTPN4P29074 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
PTPN4P29074 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PTPN4P29074 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
PTPN4P29074 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
PTPN4P29074 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.73■□□□□ 0.91
PTPN4P29074 AC090192.1-201ENST00000517740 490 ntBASIC20.73■□□□□ 0.91
PTPN4P29074 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PTPN4P29074 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
PTPN4P29074 NTF6G-201ENST00000591094 616 ntBASIC20.73■□□□□ 0.91
PTPN4P29074 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
PTPN4P29074 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.73■□□□□ 0.91
PTPN4P29074 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.73■□□□□ 0.91
PTPN4P29074 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
PTPN4P29074 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
PTPN4P29074 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PTPN4P29074 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PTPN4P29074 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PTPN4P29074 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.72■□□□□ 0.91
PTPN4P29074 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PTPN4P29074 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PTPN4P29074 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
PTPN4P29074 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.72■□□□□ 0.91
PTPN4P29074 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.72■□□□□ 0.91
PTPN4P29074 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.72■□□□□ 0.91
PTPN4P29074 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PTPN4P29074 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.72■□□□□ 0.91
PTPN4P29074 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC20.72■□□□□ 0.91
PTPN4P29074 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
PTPN4P29074 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
PTPN4P29074 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PTPN4P29074 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC20.72■□□□□ 0.91
PTPN4P29074 AP005212.1-201ENST00000581547 1997 ntBASIC20.72■□□□□ 0.91
PTPN4P29074 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
PTPN4P29074 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN4P29074 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN4P29074 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
PTPN4P29074 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN4P29074 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
PTPN4P29074 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.71■□□□□ 0.91
PTPN4P29074 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
PTPN4P29074 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN4P29074 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN4P29074 AC026471.6-201ENST00000622954 1905 ntBASIC20.71■□□□□ 0.91
PTPN4P29074 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN4P29074 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN4P29074 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
PTPN4P29074 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
PTPN4P29074 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.71■□□□□ 0.91
PTPN4P29074 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.71■□□□□ 0.91
PTPN4P29074 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.71■□□□□ 0.91
PTPN4P29074 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN4P29074 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.71■□□□□ 0.91
PTPN4P29074 AC092437.1-201ENST00000624794 1048 ntBASIC20.71■□□□□ 0.91
PTPN4P29074 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN4P29074 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN4P29074 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN4P29074 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN4P29074 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.71■□□□□ 0.91
PTPN4P29074 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
PTPN4P29074 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
PTPN4P29074 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.7■□□□□ 0.9
PTPN4P29074 AL049796.1-201ENST00000565336 1766 ntBASIC20.7■□□□□ 0.9
PTPN4P29074 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.7■□□□□ 0.9
PTPN4P29074 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTPN4P29074 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.7■□□□□ 0.9
PTPN4P29074 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
PTPN4P29074 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTPN4P29074 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.7■□□□□ 0.9
PTPN4P29074 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.7■□□□□ 0.9
PTPN4P29074 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.7■□□□□ 0.9
PTPN4P29074 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.7■□□□□ 0.9
PTPN4P29074 AFG3L1P-217ENST00000557444 2447 ntBASIC20.7■□□□□ 0.9
PTPN4P29074 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTPN4P29074 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTPN4P29074 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PTPN4P29074 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTPN4P29074 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
PTPN4P29074 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
PTPN4P29074 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN4P29074 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN4P29074 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN4P29074 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.69■□□□□ 0.9
PTPN4P29074 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
PTPN4P29074 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN4P29074 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.69■□□□□ 0.9
PTPN4P29074 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.69■□□□□ 0.9
PTPN4P29074 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN4P29074 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN4P29074 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
PTPN4P29074 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20.69■□□□□ 0.9
PTPN4P29074 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.69■□□□□ 0.9
PTPN4P29074 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.69■□□□□ 0.9
PTPN4P29074 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.69■□□□□ 0.9
PTPN4P29074 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.69■□□□□ 0.9
PTPN4P29074 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms