Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSX1P28360 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSX1P28360 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.98■□□□□ 0.63
MSX1P28360 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSX1P28360 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSX1P28360 TSPY6P-201ENST00000448518 926 ntBASIC18.98■□□□□ 0.63
MSX1P28360 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
MSX1P28360 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSX1P28360 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
MSX1P28360 MAZ-216ENST00000616501 991 ntTSL 5 BASIC18.98■□□□□ 0.63
MSX1P28360 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.98■□□□□ 0.63
MSX1P28360 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSX1P28360 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC18.98■□□□□ 0.63
MSX1P28360 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.98■□□□□ 0.63
MSX1P28360 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSX1P28360 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
MSX1P28360 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
MSX1P28360 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
MSX1P28360 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MSX1P28360 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC18.97■□□□□ 0.63
MSX1P28360 AC083906.2-201ENST00000511578 360 ntBASIC18.97■□□□□ 0.63
MSX1P28360 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
MSX1P28360 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.97■□□□□ 0.63
MSX1P28360 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
MSX1P28360 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MSX1P28360 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
MSX1P28360 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
MSX1P28360 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
MSX1P28360 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
MSX1P28360 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSX1P28360 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSX1P28360 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSX1P28360 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSX1P28360 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
MSX1P28360 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
MSX1P28360 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSX1P28360 FEM1AP4-201ENST00000443167 1987 ntBASIC18.96■□□□□ 0.63
MSX1P28360 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
MSX1P28360 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSX1P28360 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
MSX1P28360 AC007322.1-201ENST00000426983 750 ntBASIC18.96■□□□□ 0.63
MSX1P28360 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
MSX1P28360 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.96■□□□□ 0.63
MSX1P28360 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.96■□□□□ 0.63
MSX1P28360 DUX4L16-201ENST00000555130 1264 ntBASIC18.96■□□□□ 0.63
MSX1P28360 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSX1P28360 AC010536.3-201ENST00000620306 533 ntBASIC18.96■□□□□ 0.63
MSX1P28360 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
MSX1P28360 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC18.96■□□□□ 0.63
MSX1P28360 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
MSX1P28360 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
MSX1P28360 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
MSX1P28360 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
MSX1P28360 AC026310.3-201ENST00000625186 2373 ntBASIC18.96■□□□□ 0.63
MSX1P28360 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSX1P28360 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSX1P28360 RBM17P2-201ENST00000616397 1405 ntBASIC18.95■□□□□ 0.62
MSX1P28360 TERF1P5-201ENST00000477545 1207 ntBASIC18.95■□□□□ 0.62
MSX1P28360 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.95■□□□□ 0.62
MSX1P28360 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC18.95■□□□□ 0.62
MSX1P28360 AC005181.1-201ENST00000604782 1256 ntBASIC18.95■□□□□ 0.62
MSX1P28360 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.95■□□□□ 0.62
MSX1P28360 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
MSX1P28360 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSX1P28360 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
MSX1P28360 AL049796.1-201ENST00000565336 1766 ntBASIC18.95■□□□□ 0.62
MSX1P28360 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
MSX1P28360 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC18.95■□□□□ 0.62
MSX1P28360 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSX1P28360 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSX1P28360 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSX1P28360 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSX1P28360 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSX1P28360 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSX1P28360 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.94■□□□□ 0.62
MSX1P28360 GUSBP6-202ENST00000438529 1198 ntBASIC18.94■□□□□ 0.62
MSX1P28360 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.94■□□□□ 0.62
MSX1P28360 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.94■□□□□ 0.62
MSX1P28360 OAS3-207ENST00000551007 998 ntTSL 2 BASIC18.94■□□□□ 0.62
MSX1P28360 KRT18P6-201ENST00000555540 1265 ntBASIC18.94■□□□□ 0.62
MSX1P28360 AL024507.2-201ENST00000606070 2574 ntBASIC18.94■□□□□ 0.62
MSX1P28360 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSX1P28360 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.94■□□□□ 0.62
MSX1P28360 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
MSX1P28360 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
MSX1P28360 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
MSX1P28360 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
MSX1P28360 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.94■□□□□ 0.62
MSX1P28360 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC18.93■□□□□ 0.62
MSX1P28360 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.93■□□□□ 0.62
MSX1P28360 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC18.93■□□□□ 0.62
MSX1P28360 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSX1P28360 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSX1P28360 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
MSX1P28360 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
MSX1P28360 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.93■□□□□ 0.62
MSX1P28360 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.93■□□□□ 0.62
MSX1P28360 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
MSX1P28360 CD44-222ENST00000526025 1052 ntTSL 2 BASIC18.93■□□□□ 0.62
MSX1P28360 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms