Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.28■□□□□ 0.84
VPS4BO75351 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.28■□□□□ 0.84
VPS4BO75351 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
VPS4BO75351 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS4BO75351 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS4BO75351 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS4BO75351 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS4BO75351 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS4BO75351 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS4BO75351 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS4BO75351 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
VPS4BO75351 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VPS4BO75351 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS4BO75351 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.27■□□□□ 0.84
VPS4BO75351 SMUG1P1-201ENST00000590640 811 ntBASIC20.27■□□□□ 0.84
VPS4BO75351 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
VPS4BO75351 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.27■□□□□ 0.84
VPS4BO75351 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.27■□□□□ 0.84
VPS4BO75351 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS4BO75351 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS4BO75351 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS4BO75351 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VPS4BO75351 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.27■□□□□ 0.83
VPS4BO75351 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
VPS4BO75351 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
VPS4BO75351 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS4BO75351 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.26■□□□□ 0.83
VPS4BO75351 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS4BO75351 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS4BO75351 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
VPS4BO75351 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS4BO75351 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
VPS4BO75351 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.26■□□□□ 0.83
VPS4BO75351 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.26■□□□□ 0.83
VPS4BO75351 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
VPS4BO75351 GABARAPL3-202ENST00000624044 1851 ntBASIC20.26■□□□□ 0.83
VPS4BO75351 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.26■□□□□ 0.83
VPS4BO75351 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS4BO75351 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS4BO75351 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS4BO75351 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
VPS4BO75351 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS4BO75351 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS4BO75351 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS4BO75351 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VPS4BO75351 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.25■□□□□ 0.83
VPS4BO75351 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS4BO75351 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS4BO75351 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS4BO75351 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VPS4BO75351 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.25■□□□□ 0.83
VPS4BO75351 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.25■□□□□ 0.83
VPS4BO75351 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS4BO75351 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS4BO75351 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.25■□□□□ 0.83
VPS4BO75351 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.25■□□□□ 0.83
VPS4BO75351 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS4BO75351 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.24■□□□□ 0.83
VPS4BO75351 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS4BO75351 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS4BO75351 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS4BO75351 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.24■□□□□ 0.83
VPS4BO75351 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
VPS4BO75351 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.24■□□□□ 0.83
VPS4BO75351 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS4BO75351 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS4BO75351 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS4BO75351 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
VPS4BO75351 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS4BO75351 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS4BO75351 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
VPS4BO75351 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
VPS4BO75351 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS4BO75351 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS4BO75351 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VPS4BO75351 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VPS4BO75351 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VPS4BO75351 AC009237.3-201ENST00000393279 1427 ntBASIC20.23■□□□□ 0.83
VPS4BO75351 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.23■□□□□ 0.83
VPS4BO75351 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.23■□□□□ 0.83
VPS4BO75351 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VPS4BO75351 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS4BO75351 AC137761.2-201ENST00000561729 223 ntBASIC20.23■□□□□ 0.83
VPS4BO75351 AC145350.3-201ENST00000569033 163 ntBASIC20.23■□□□□ 0.83
VPS4BO75351 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.23■□□□□ 0.83
VPS4BO75351 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
VPS4BO75351 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.23■□□□□ 0.83
VPS4BO75351 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS4BO75351 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.23■□□□□ 0.83
VPS4BO75351 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.23■□□□□ 0.83
VPS4BO75351 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.23■□□□□ 0.83
VPS4BO75351 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS4BO75351 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS4BO75351 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS4BO75351 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS4BO75351 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS4BO75351 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VPS4BO75351 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS4BO75351 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
VPS4BO75351 ABHD17AP1-201ENST00000358206 933 ntBASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms