Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
FOXA2Q9Y261 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA2Q9Y261 AC055733.4-201ENST00000638462 1354 ntBASIC16.78■□□□□ 0.28
FOXA2Q9Y261 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
FOXA2Q9Y261 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA2Q9Y261 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA2Q9Y261 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
FOXA2Q9Y261 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC16.78■□□□□ 0.28
FOXA2Q9Y261 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC16.78■□□□□ 0.28
FOXA2Q9Y261 ME2-216ENST00000639850 2331 ntTSL 5 BASIC16.78■□□□□ 0.28
FOXA2Q9Y261 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA2Q9Y261 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA2Q9Y261 FXN-202ENST00000396364 980 ntTSL 5 BASIC16.78■□□□□ 0.28
FOXA2Q9Y261 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC16.78■□□□□ 0.28
FOXA2Q9Y261 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC16.78■□□□□ 0.28
FOXA2Q9Y261 ERF-202ENST00000440177 2032 ntTSL 2 BASIC16.78■□□□□ 0.28
FOXA2Q9Y261 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
FOXA2Q9Y261 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
FOXA2Q9Y261 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
FOXA2Q9Y261 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA2Q9Y261 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA2Q9Y261 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
FOXA2Q9Y261 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC16.77■□□□□ 0.28
FOXA2Q9Y261 PLK5-205ENST00000642079 1969 ntBASIC16.77■□□□□ 0.28
FOXA2Q9Y261 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA2Q9Y261 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA2Q9Y261 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA2Q9Y261 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA2Q9Y261 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA2Q9Y261 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA2Q9Y261 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA2Q9Y261 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA2Q9Y261 RAB43-208ENST00000615093 783 ntTSL 5 BASIC16.77■□□□□ 0.28
FOXA2Q9Y261 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA2Q9Y261 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA2Q9Y261 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
FOXA2Q9Y261 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
FOXA2Q9Y261 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
FOXA2Q9Y261 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
FOXA2Q9Y261 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
FOXA2Q9Y261 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
FOXA2Q9Y261 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC16.77■□□□□ 0.27
FOXA2Q9Y261 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
FOXA2Q9Y261 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
FOXA2Q9Y261 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC16.77■□□□□ 0.27
FOXA2Q9Y261 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
FOXA2Q9Y261 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
FOXA2Q9Y261 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 GABARAPL3-202ENST00000624044 1851 ntBASIC16.76■□□□□ 0.27
FOXA2Q9Y261 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 AC097381.1-201ENST00000429019 1296 ntBASIC16.76■□□□□ 0.27
FOXA2Q9Y261 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC16.76■□□□□ 0.27
FOXA2Q9Y261 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
FOXA2Q9Y261 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 MIR6821-201ENST00000617625 74 ntBASIC16.75■□□□□ 0.27
FOXA2Q9Y261 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
FOXA2Q9Y261 AC121338.2-201ENST00000622535 1744 ntBASIC16.75■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 12.4 ms