Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
DKK3Q9UBP4 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
DKK3Q9UBP4 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
DKK3Q9UBP4 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
DKK3Q9UBP4 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
DKK3Q9UBP4 GUSBP6-202ENST00000438529 1198 ntBASIC20.9■□□□□ 0.94
DKK3Q9UBP4 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
DKK3Q9UBP4 AC105036.2-201ENST00000569468 176 ntBASIC20.9■□□□□ 0.94
DKK3Q9UBP4 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.9■□□□□ 0.94
DKK3Q9UBP4 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
DKK3Q9UBP4 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.9■□□□□ 0.94
DKK3Q9UBP4 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
DKK3Q9UBP4 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.9■□□□□ 0.94
DKK3Q9UBP4 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
DKK3Q9UBP4 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
DKK3Q9UBP4 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
DKK3Q9UBP4 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
DKK3Q9UBP4 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
DKK3Q9UBP4 RARRES2P4-201ENST00000514074 484 ntBASIC20.89■□□□□ 0.93
DKK3Q9UBP4 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.89■□□□□ 0.93
DKK3Q9UBP4 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.89■□□□□ 0.93
DKK3Q9UBP4 FAM21FP-204ENST00000608637 956 ntBASIC20.89■□□□□ 0.93
DKK3Q9UBP4 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
DKK3Q9UBP4 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
DKK3Q9UBP4 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
DKK3Q9UBP4 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
DKK3Q9UBP4 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
DKK3Q9UBP4 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
DKK3Q9UBP4 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
DKK3Q9UBP4 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
DKK3Q9UBP4 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
DKK3Q9UBP4 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
DKK3Q9UBP4 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.88■□□□□ 0.93
DKK3Q9UBP4 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
DKK3Q9UBP4 FBXW4P1-201ENST00000426721 2239 ntBASIC20.88■□□□□ 0.93
DKK3Q9UBP4 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
DKK3Q9UBP4 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
DKK3Q9UBP4 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
DKK3Q9UBP4 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
DKK3Q9UBP4 CDV3P1-201ENST00000471403 739 ntBASIC20.88■□□□□ 0.93
DKK3Q9UBP4 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
DKK3Q9UBP4 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.88■□□□□ 0.93
DKK3Q9UBP4 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
DKK3Q9UBP4 AC016405.3-201ENST00000607710 860 ntBASIC20.88■□□□□ 0.93
DKK3Q9UBP4 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.88■□□□□ 0.93
DKK3Q9UBP4 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
DKK3Q9UBP4 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.88■□□□□ 0.93
DKK3Q9UBP4 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.87■□□□□ 0.93
DKK3Q9UBP4 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.87■□□□□ 0.93
DKK3Q9UBP4 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
DKK3Q9UBP4 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
DKK3Q9UBP4 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
DKK3Q9UBP4 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
DKK3Q9UBP4 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.87■□□□□ 0.93
DKK3Q9UBP4 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
DKK3Q9UBP4 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
DKK3Q9UBP4 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.87■□□□□ 0.93
DKK3Q9UBP4 AC142086.2-201ENST00000569753 217 ntBASIC20.87■□□□□ 0.93
DKK3Q9UBP4 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.87■□□□□ 0.93
DKK3Q9UBP4 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.87■□□□□ 0.93
DKK3Q9UBP4 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
DKK3Q9UBP4 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.87■□□□□ 0.93
DKK3Q9UBP4 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
DKK3Q9UBP4 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
DKK3Q9UBP4 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
DKK3Q9UBP4 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
DKK3Q9UBP4 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
DKK3Q9UBP4 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
DKK3Q9UBP4 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.86■□□□□ 0.93
DKK3Q9UBP4 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
DKK3Q9UBP4 SLC29A4P1-201ENST00000398760 971 ntBASIC20.86■□□□□ 0.93
DKK3Q9UBP4 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.86■□□□□ 0.93
DKK3Q9UBP4 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
DKK3Q9UBP4 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.86■□□□□ 0.93
DKK3Q9UBP4 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC20.86■□□□□ 0.93
DKK3Q9UBP4 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
DKK3Q9UBP4 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.85■□□□□ 0.93
DKK3Q9UBP4 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
DKK3Q9UBP4 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
DKK3Q9UBP4 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
DKK3Q9UBP4 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.85■□□□□ 0.93
DKK3Q9UBP4 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.85■□□□□ 0.93
DKK3Q9UBP4 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.85■□□□□ 0.93
DKK3Q9UBP4 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
DKK3Q9UBP4 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
DKK3Q9UBP4 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
DKK3Q9UBP4 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
DKK3Q9UBP4 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC20.84■□□□□ 0.93
DKK3Q9UBP4 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
DKK3Q9UBP4 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
DKK3Q9UBP4 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
DKK3Q9UBP4 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
DKK3Q9UBP4 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
DKK3Q9UBP4 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.84■□□□□ 0.93
DKK3Q9UBP4 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.84■□□□□ 0.93
DKK3Q9UBP4 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.84■□□□□ 0.93
DKK3Q9UBP4 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.84■□□□□ 0.93
DKK3Q9UBP4 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC20.84■□□□□ 0.93
DKK3Q9UBP4 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.84■□□□□ 0.93
DKK3Q9UBP4 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms