Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CHMP1AQ9HD42 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CHMP1AQ9HD42 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CHMP1AQ9HD42 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC17.8■□□□□ 0.44
CHMP1AQ9HD42 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC17.8■□□□□ 0.44
CHMP1AQ9HD42 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC17.8■□□□□ 0.44
CHMP1AQ9HD42 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP1AQ9HD42 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC17.8■□□□□ 0.44
CHMP1AQ9HD42 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC17.8■□□□□ 0.44
CHMP1AQ9HD42 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP1AQ9HD42 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC17.8■□□□□ 0.44
CHMP1AQ9HD42 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC17.8■□□□□ 0.44
CHMP1AQ9HD42 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP1AQ9HD42 RARG-204ENST00000543726 1779 ntTSL 2 BASIC17.8■□□□□ 0.44
CHMP1AQ9HD42 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CHMP1AQ9HD42 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP1AQ9HD42 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CHMP1AQ9HD42 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP1AQ9HD42 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC17.8■□□□□ 0.44
CHMP1AQ9HD42 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP1AQ9HD42 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CHMP1AQ9HD42 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC17.8■□□□□ 0.44
CHMP1AQ9HD42 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC17.8■□□□□ 0.44
CHMP1AQ9HD42 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
CHMP1AQ9HD42 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC17.79■□□□□ 0.44
CHMP1AQ9HD42 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC17.79■□□□□ 0.44
CHMP1AQ9HD42 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP1AQ9HD42 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP1AQ9HD42 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP1AQ9HD42 MIR4466-201ENST00000606121 54 ntBASIC17.79■□□□□ 0.44
CHMP1AQ9HD42 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC17.79■□□□□ 0.44
CHMP1AQ9HD42 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP1AQ9HD42 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP1AQ9HD42 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP1AQ9HD42 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP1AQ9HD42 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CHMP1AQ9HD42 AC003102.1-202ENST00000563394 1796 ntBASIC17.79■□□□□ 0.44
CHMP1AQ9HD42 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 SF1-220ENST00000626028 704 ntTSL 2 BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
CHMP1AQ9HD42 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP1AQ9HD42 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP1AQ9HD42 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.77■□□□□ 0.44
CHMP1AQ9HD42 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP1AQ9HD42 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP1AQ9HD42 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP1AQ9HD42 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
CHMP1AQ9HD42 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC17.77■□□□□ 0.44
CHMP1AQ9HD42 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CHMP1AQ9HD42 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CHMP1AQ9HD42 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CHMP1AQ9HD42 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
CHMP1AQ9HD42 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CHMP1AQ9HD42 FEM1AP1-201ENST00000431297 1995 ntBASIC17.77■□□□□ 0.43
CHMP1AQ9HD42 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CHMP1AQ9HD42 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CHMP1AQ9HD42 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
CHMP1AQ9HD42 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 PARN-205ENST00000539279 1557 ntTSL 2 BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CHMP1AQ9HD42 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms