Protein–RNA interactions for Protein: Q9H9S3

SEC61A2, Protein transport protein Sec61 subunit alpha isoform 2, humanhuman

Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A2Q9H9S3 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
SEC61A2Q9H9S3 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SEC61A2Q9H9S3 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
SEC61A2Q9H9S3 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SEC61A2Q9H9S3 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
SEC61A2Q9H9S3 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 RARG-204ENST00000543726 1779 ntTSL 2 BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.6■□□□□ 0.57
SEC61A2Q9H9S3 STX5-203ENST00000394690 1568 ntTSL 5 BASIC18.59■□□□□ 0.57
SEC61A2Q9H9S3 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
SEC61A2Q9H9S3 MFF-207ENST00000409565 1548 ntTSL 2 BASIC18.59■□□□□ 0.57
SEC61A2Q9H9S3 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SEC61A2Q9H9S3 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
SEC61A2Q9H9S3 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC18.59■□□□□ 0.57
SEC61A2Q9H9S3 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
SEC61A2Q9H9S3 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SEC61A2Q9H9S3 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC18.59■□□□□ 0.57
SEC61A2Q9H9S3 NTF6G-201ENST00000591094 616 ntBASIC18.59■□□□□ 0.57
SEC61A2Q9H9S3 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC18.59■□□□□ 0.57
SEC61A2Q9H9S3 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.59■□□□□ 0.57
SEC61A2Q9H9S3 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SEC61A2Q9H9S3 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SEC61A2Q9H9S3 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SEC61A2Q9H9S3 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.59■□□□□ 0.57
SEC61A2Q9H9S3 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SEC61A2Q9H9S3 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SEC61A2Q9H9S3 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SEC61A2Q9H9S3 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SEC61A2Q9H9S3 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.59■□□□□ 0.57
SEC61A2Q9H9S3 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
SEC61A2Q9H9S3 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.58■□□□□ 0.57
SEC61A2Q9H9S3 AC004854.2-201ENST00000608450 1441 ntBASIC18.58■□□□□ 0.57
SEC61A2Q9H9S3 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SEC61A2Q9H9S3 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SEC61A2Q9H9S3 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SEC61A2Q9H9S3 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SEC61A2Q9H9S3 AC079140.4-201ENST00000507448 529 ntBASIC18.58■□□□□ 0.56
SEC61A2Q9H9S3 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SEC61A2Q9H9S3 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SEC61A2Q9H9S3 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SEC61A2Q9H9S3 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
SEC61A2Q9H9S3 PARN-205ENST00000539279 1557 ntTSL 2 BASIC18.58■□□□□ 0.56
SEC61A2Q9H9S3 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SEC61A2Q9H9S3 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SEC61A2Q9H9S3 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SEC61A2Q9H9S3 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SEC61A2Q9H9S3 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC18.58■□□□□ 0.56
SEC61A2Q9H9S3 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SEC61A2Q9H9S3 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.57■□□□□ 0.56
SEC61A2Q9H9S3 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
SEC61A2Q9H9S3 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SEC61A2Q9H9S3 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SEC61A2Q9H9S3 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SEC61A2Q9H9S3 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SEC61A2Q9H9S3 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SEC61A2Q9H9S3 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SEC61A2Q9H9S3 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.57■□□□□ 0.56
SEC61A2Q9H9S3 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.57■□□□□ 0.56
SEC61A2Q9H9S3 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC18.57■□□□□ 0.56
SEC61A2Q9H9S3 CPT2-209ENST00000636935 803 ntTSL 5 BASIC18.57■□□□□ 0.56
SEC61A2Q9H9S3 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC18.57■□□□□ 0.56
SEC61A2Q9H9S3 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SEC61A2Q9H9S3 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SEC61A2Q9H9S3 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SEC61A2Q9H9S3 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SEC61A2Q9H9S3 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
SEC61A2Q9H9S3 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.56■□□□□ 0.56
SEC61A2Q9H9S3 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SEC61A2Q9H9S3 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SEC61A2Q9H9S3 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SEC61A2Q9H9S3 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SEC61A2Q9H9S3 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SEC61A2Q9H9S3 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SEC61A2Q9H9S3 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.56■□□□□ 0.56
SEC61A2Q9H9S3 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SEC61A2Q9H9S3 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SEC61A2Q9H9S3 PARL-206ENST00000435888 1098 ntTSL 5 BASIC18.56■□□□□ 0.56
SEC61A2Q9H9S3 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.56■□□□□ 0.56
SEC61A2Q9H9S3 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms