Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC26.58■■□□□ 1.85
USP42Q9H9J4 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
USP42Q9H9J4 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
USP42Q9H9J4 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
USP42Q9H9J4 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC26.58■■□□□ 1.84
USP42Q9H9J4 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC26.58■■□□□ 1.84
USP42Q9H9J4 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC26.58■■□□□ 1.84
USP42Q9H9J4 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC26.57■■□□□ 1.84
USP42Q9H9J4 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
USP42Q9H9J4 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC26.57■■□□□ 1.84
USP42Q9H9J4 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC26.57■■□□□ 1.84
USP42Q9H9J4 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC26.57■■□□□ 1.84
USP42Q9H9J4 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
USP42Q9H9J4 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC26.57■■□□□ 1.84
USP42Q9H9J4 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC26.57■■□□□ 1.84
USP42Q9H9J4 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
USP42Q9H9J4 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
USP42Q9H9J4 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC26.56■■□□□ 1.84
USP42Q9H9J4 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
USP42Q9H9J4 AC003102.1-202ENST00000563394 1796 ntBASIC26.56■■□□□ 1.84
USP42Q9H9J4 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
USP42Q9H9J4 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC26.56■■□□□ 1.84
USP42Q9H9J4 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC26.56■■□□□ 1.84
USP42Q9H9J4 RPPH1-201ENST00000516869 333 ntBASIC26.56■■□□□ 1.84
USP42Q9H9J4 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC26.56■■□□□ 1.84
USP42Q9H9J4 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
USP42Q9H9J4 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC26.56■■□□□ 1.84
USP42Q9H9J4 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC26.56■■□□□ 1.84
USP42Q9H9J4 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
USP42Q9H9J4 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC26.56■■□□□ 1.84
USP42Q9H9J4 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
USP42Q9H9J4 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
USP42Q9H9J4 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
USP42Q9H9J4 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
USP42Q9H9J4 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
USP42Q9H9J4 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC26.55■■□□□ 1.84
USP42Q9H9J4 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
USP42Q9H9J4 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC26.55■■□□□ 1.84
USP42Q9H9J4 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
USP42Q9H9J4 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
USP42Q9H9J4 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
USP42Q9H9J4 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC26.55■■□□□ 1.84
USP42Q9H9J4 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC26.55■■□□□ 1.84
USP42Q9H9J4 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC26.55■■□□□ 1.84
USP42Q9H9J4 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC26.55■■□□□ 1.84
USP42Q9H9J4 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC26.55■■□□□ 1.84
USP42Q9H9J4 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
USP42Q9H9J4 AC079834.2-201ENST00000609776 1949 ntBASIC26.55■■□□□ 1.84
USP42Q9H9J4 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP42Q9H9J4 EP400NL-214ENST00000641289 2402 ntBASIC26.54■■□□□ 1.84
USP42Q9H9J4 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
USP42Q9H9J4 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
USP42Q9H9J4 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP42Q9H9J4 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP42Q9H9J4 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP42Q9H9J4 MIR718-201ENST00000390190 70 ntBASIC26.54■■□□□ 1.84
USP42Q9H9J4 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC26.54■■□□□ 1.84
USP42Q9H9J4 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
USP42Q9H9J4 PNMA6B-201ENST00000538162 1200 ntBASIC26.54■■□□□ 1.84
USP42Q9H9J4 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC26.54■■□□□ 1.84
USP42Q9H9J4 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP42Q9H9J4 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC26.54■■□□□ 1.84
USP42Q9H9J4 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC26.54■■□□□ 1.84
USP42Q9H9J4 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
USP42Q9H9J4 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC26.53■■□□□ 1.84
USP42Q9H9J4 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC26.53■■□□□ 1.84
USP42Q9H9J4 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
USP42Q9H9J4 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
USP42Q9H9J4 MIR4497-201ENST00000583208 89 ntBASIC26.53■■□□□ 1.84
USP42Q9H9J4 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
USP42Q9H9J4 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC26.53■■□□□ 1.84
USP42Q9H9J4 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
USP42Q9H9J4 AC092053.2-201ENST00000640557 1818 ntBASIC26.53■■□□□ 1.84
USP42Q9H9J4 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
USP42Q9H9J4 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC26.53■■□□□ 1.84
USP42Q9H9J4 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
USP42Q9H9J4 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
USP42Q9H9J4 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC26.52■■□□□ 1.84
USP42Q9H9J4 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
USP42Q9H9J4 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC26.52■■□□□ 1.84
USP42Q9H9J4 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC26.52■■□□□ 1.84
USP42Q9H9J4 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC26.52■■□□□ 1.84
USP42Q9H9J4 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC26.52■■□□□ 1.84
USP42Q9H9J4 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC26.52■■□□□ 1.84
USP42Q9H9J4 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
USP42Q9H9J4 C1QBPP2-201ENST00000528754 825 ntBASIC26.52■■□□□ 1.84
USP42Q9H9J4 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC26.52■■□□□ 1.84
USP42Q9H9J4 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC26.52■■□□□ 1.84
USP42Q9H9J4 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
USP42Q9H9J4 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC26.52■■□□□ 1.84
USP42Q9H9J4 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC26.52■■□□□ 1.84
USP42Q9H9J4 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC26.51■■□□□ 1.83
USP42Q9H9J4 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
USP42Q9H9J4 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC26.51■■□□□ 1.83
USP42Q9H9J4 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC26.51■■□□□ 1.83
USP42Q9H9J4 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC26.51■■□□□ 1.83
USP42Q9H9J4 AC233263.1-201ENST00000578059 224 ntBASIC26.51■■□□□ 1.83
USP42Q9H9J4 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC26.51■■□□□ 1.83
USP42Q9H9J4 AL589743.5-201ENST00000616611 1050 ntBASIC26.51■■□□□ 1.83
USP42Q9H9J4 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 63.4 ms