Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM55Q9BYV6 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.88■□□□□ 0.93
TRIM55Q9BYV6 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
TRIM55Q9BYV6 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM55Q9BYV6 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC20.87■□□□□ 0.93
TRIM55Q9BYV6 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM55Q9BYV6 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM55Q9BYV6 AP005212.1-201ENST00000581547 1997 ntBASIC20.87■□□□□ 0.93
TRIM55Q9BYV6 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM55Q9BYV6 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.87■□□□□ 0.93
TRIM55Q9BYV6 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC20.87■□□□□ 0.93
TRIM55Q9BYV6 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
TRIM55Q9BYV6 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.87■□□□□ 0.93
TRIM55Q9BYV6 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM55Q9BYV6 YBX1P1-201ENST00000445822 960 ntBASIC20.87■□□□□ 0.93
TRIM55Q9BYV6 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
TRIM55Q9BYV6 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM55Q9BYV6 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM55Q9BYV6 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
TRIM55Q9BYV6 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM55Q9BYV6 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.87■□□□□ 0.93
TRIM55Q9BYV6 RNF165-205ENST00000588679 2904 ntBASIC20.87■□□□□ 0.93
TRIM55Q9BYV6 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM55Q9BYV6 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM55Q9BYV6 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.86■□□□□ 0.93
TRIM55Q9BYV6 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
TRIM55Q9BYV6 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.86■□□□□ 0.93
TRIM55Q9BYV6 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.86■□□□□ 0.93
TRIM55Q9BYV6 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.86■□□□□ 0.93
TRIM55Q9BYV6 KRT18P5-201ENST00000436075 1291 ntBASIC20.86■□□□□ 0.93
TRIM55Q9BYV6 AC022517.1-201ENST00000592429 346 ntBASIC20.86■□□□□ 0.93
TRIM55Q9BYV6 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM55Q9BYV6 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM55Q9BYV6 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.86■□□□□ 0.93
TRIM55Q9BYV6 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
TRIM55Q9BYV6 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM55Q9BYV6 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM55Q9BYV6 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM55Q9BYV6 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 AC090192.1-201ENST00000517740 490 ntBASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 RARRES2P11-201ENST00000635158 484 ntBASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM55Q9BYV6 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 DUX4L2-201ENST00000561772 1275 ntBASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 DUX4L6-201ENST00000626483 1275 ntBASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 DUX4L1-201ENST00000627662 1275 ntBASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 DUX4L8-201ENST00000629013 1275 ntBASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 DUX4L3-201ENST00000630187 1275 ntBASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 DUX4L7-201ENST00000630678 1275 ntBASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 DUX4L5-201ENST00000630834 1275 ntBASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM55Q9BYV6 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM55Q9BYV6 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.83■□□□□ 0.93
TRIM55Q9BYV6 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms