Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 AC008764.7-201ENST00000593779 1081 ntBASIC12.32□□□□□ -0.44
LIMD2Q9BT23 GRAMD4P4-201ENST00000613563 1115 ntBASIC12.32□□□□□ -0.44
LIMD2Q9BT23 AC106739.1-201ENST00000617035 715 ntBASIC12.32□□□□□ -0.44
LIMD2Q9BT23 AL355001.2-201ENST00000620617 1191 ntBASIC12.32□□□□□ -0.44
LIMD2Q9BT23 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.32□□□□□ -0.44
LIMD2Q9BT23 AC244015.2-201ENST00000616358 1861 ntBASIC12.31□□□□□ -0.44
LIMD2Q9BT23 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 LHPP-203ENST00000392757 840 ntTSL 3 BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 FXN-202ENST00000396364 980 ntTSL 5 BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 MFF-208ENST00000409616 1247 ntTSL 5 BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 AC099791.1-201ENST00000416440 715 ntBASIC12.31□□□□□ -0.44
LIMD2Q9BT23 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
LIMD2Q9BT23 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 TUB-203ENST00000534099 1759 ntTSL 2 BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 AC009237.3-201ENST00000393279 1427 ntBASIC12.3□□□□□ -0.44
LIMD2Q9BT23 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 AC091305.1-201ENST00000479476 895 ntBASIC12.3□□□□□ -0.44
LIMD2Q9BT23 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 MCC-208ENST00000514701 2855 ntTSL 2 BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC12.3□□□□□ -0.44
LIMD2Q9BT23 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LIMD2Q9BT23 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
LIMD2Q9BT23 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC12.29□□□□□ -0.44
LIMD2Q9BT23 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
LIMD2Q9BT23 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC12.29□□□□□ -0.44
LIMD2Q9BT23 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC12.29□□□□□ -0.44
LIMD2Q9BT23 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms