Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SKA3Q8IX90 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SKA3Q8IX90 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SKA3Q8IX90 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.37■□□□□ 0.53
SKA3Q8IX90 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
SKA3Q8IX90 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SKA3Q8IX90 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SKA3Q8IX90 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SKA3Q8IX90 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SKA3Q8IX90 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SKA3Q8IX90 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
SKA3Q8IX90 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SKA3Q8IX90 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SKA3Q8IX90 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC18.36■□□□□ 0.53
SKA3Q8IX90 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SKA3Q8IX90 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SKA3Q8IX90 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC18.36■□□□□ 0.53
SKA3Q8IX90 SLC7A5P2-201ENST00000553010 536 ntBASIC18.36■□□□□ 0.53
SKA3Q8IX90 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SKA3Q8IX90 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC18.36■□□□□ 0.53
SKA3Q8IX90 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC18.36■□□□□ 0.53
SKA3Q8IX90 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SKA3Q8IX90 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SKA3Q8IX90 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SKA3Q8IX90 AF106564.1-201ENST00000607058 2553 ntBASIC18.36■□□□□ 0.53
SKA3Q8IX90 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
SKA3Q8IX90 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SKA3Q8IX90 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SKA3Q8IX90 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
SKA3Q8IX90 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SKA3Q8IX90 PALM-207ENST00000590161 2137 ntTSL 4 BASIC18.35■□□□□ 0.53
SKA3Q8IX90 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SKA3Q8IX90 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
SKA3Q8IX90 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SKA3Q8IX90 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
SKA3Q8IX90 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC18.35■□□□□ 0.53
SKA3Q8IX90 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.35■□□□□ 0.53
SKA3Q8IX90 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC18.35■□□□□ 0.53
SKA3Q8IX90 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.35■□□□□ 0.53
SKA3Q8IX90 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
SKA3Q8IX90 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SKA3Q8IX90 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.35■□□□□ 0.53
SKA3Q8IX90 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
SKA3Q8IX90 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC18.35■□□□□ 0.53
SKA3Q8IX90 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.35■□□□□ 0.53
SKA3Q8IX90 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
SKA3Q8IX90 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.34■□□□□ 0.53
SKA3Q8IX90 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
SKA3Q8IX90 PARN-205ENST00000539279 1557 ntTSL 2 BASIC18.34■□□□□ 0.53
SKA3Q8IX90 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SKA3Q8IX90 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC18.34■□□□□ 0.53
SKA3Q8IX90 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SKA3Q8IX90 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.34■□□□□ 0.53
SKA3Q8IX90 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SKA3Q8IX90 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SKA3Q8IX90 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SKA3Q8IX90 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SKA3Q8IX90 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SKA3Q8IX90 KRT18P20-201ENST00000548986 1279 ntBASIC18.34■□□□□ 0.53
SKA3Q8IX90 AC120498.10-201ENST00000621827 505 ntBASIC18.34■□□□□ 0.53
SKA3Q8IX90 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.34■□□□□ 0.53
SKA3Q8IX90 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SKA3Q8IX90 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SKA3Q8IX90 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
SKA3Q8IX90 AC073130.3-201ENST00000624389 2278 ntBASIC18.34■□□□□ 0.53
SKA3Q8IX90 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
SKA3Q8IX90 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SKA3Q8IX90 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
SKA3Q8IX90 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
SKA3Q8IX90 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
SKA3Q8IX90 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
SKA3Q8IX90 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SKA3Q8IX90 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SKA3Q8IX90 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SKA3Q8IX90 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
SKA3Q8IX90 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.33■□□□□ 0.52
SKA3Q8IX90 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.33■□□□□ 0.52
SKA3Q8IX90 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
SKA3Q8IX90 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.52
SKA3Q8IX90 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SKA3Q8IX90 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
SKA3Q8IX90 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
SKA3Q8IX90 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
SKA3Q8IX90 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SKA3Q8IX90 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
SKA3Q8IX90 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.32■□□□□ 0.52
SKA3Q8IX90 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
SKA3Q8IX90 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC18.32■□□□□ 0.52
SKA3Q8IX90 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.32■□□□□ 0.52
SKA3Q8IX90 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
SKA3Q8IX90 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SKA3Q8IX90 STX7-201ENST00000367937 1090 ntTSL 5 BASIC18.32■□□□□ 0.52
SKA3Q8IX90 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
SKA3Q8IX90 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC18.32■□□□□ 0.52
SKA3Q8IX90 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC18.32■□□□□ 0.52
SKA3Q8IX90 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC18.32■□□□□ 0.52
SKA3Q8IX90 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.32■□□□□ 0.52
SKA3Q8IX90 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
SKA3Q8IX90 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
SKA3Q8IX90 AC005229.4-201ENST00000610085 2198 ntBASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms