Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC23.2■■□□□ 1.3
CCDC60Q8IWA6 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC23.2■■□□□ 1.3
CCDC60Q8IWA6 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC23.2■■□□□ 1.3
CCDC60Q8IWA6 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC23.2■■□□□ 1.3
CCDC60Q8IWA6 CDV3P1-201ENST00000471403 739 ntBASIC23.2■■□□□ 1.3
CCDC60Q8IWA6 ISCU-212ENST00000547005 795 ntTSL 3 BASIC23.2■■□□□ 1.3
CCDC60Q8IWA6 AC092118.2-201ENST00000613495 667 ntBASIC23.2■■□□□ 1.3
CCDC60Q8IWA6 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC60Q8IWA6 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC23.2■■□□□ 1.3
CCDC60Q8IWA6 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC60Q8IWA6 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC60Q8IWA6 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC23.2■■□□□ 1.3
CCDC60Q8IWA6 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC23.2■■□□□ 1.3
CCDC60Q8IWA6 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC60Q8IWA6 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC23.19■■□□□ 1.3
CCDC60Q8IWA6 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC60Q8IWA6 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC60Q8IWA6 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC60Q8IWA6 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC60Q8IWA6 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC60Q8IWA6 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
CCDC60Q8IWA6 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC23.19■■□□□ 1.3
CCDC60Q8IWA6 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC23.19■■□□□ 1.3
CCDC60Q8IWA6 KRT18P6-201ENST00000555540 1265 ntBASIC23.19■■□□□ 1.3
CCDC60Q8IWA6 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC60Q8IWA6 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC23.19■■□□□ 1.3
CCDC60Q8IWA6 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC23.19■■□□□ 1.3
CCDC60Q8IWA6 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC60Q8IWA6 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC60Q8IWA6 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC60Q8IWA6 PALM-207ENST00000590161 2137 ntTSL 4 BASIC23.18■■□□□ 1.3
CCDC60Q8IWA6 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC60Q8IWA6 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC23.18■■□□□ 1.3
CCDC60Q8IWA6 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC60Q8IWA6 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC23.18■■□□□ 1.3
CCDC60Q8IWA6 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC23.18■■□□□ 1.3
CCDC60Q8IWA6 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
CCDC60Q8IWA6 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC23.18■■□□□ 1.3
CCDC60Q8IWA6 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC23.18■■□□□ 1.3
CCDC60Q8IWA6 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC23.18■■□□□ 1.3
CCDC60Q8IWA6 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC60Q8IWA6 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC23.17■■□□□ 1.3
CCDC60Q8IWA6 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
CCDC60Q8IWA6 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC60Q8IWA6 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC60Q8IWA6 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC23.17■■□□□ 1.3
CCDC60Q8IWA6 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC23.17■■□□□ 1.3
CCDC60Q8IWA6 AC007322.3-201ENST00000426526 701 ntBASIC23.17■■□□□ 1.3
CCDC60Q8IWA6 VMO1-204ENST00000441199 741 ntTSL 2 BASIC23.17■■□□□ 1.3
CCDC60Q8IWA6 CD99P1-205ENST00000527459 561 ntBASIC23.17■■□□□ 1.3
CCDC60Q8IWA6 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC23.17■■□□□ 1.3
CCDC60Q8IWA6 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC60Q8IWA6 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC60Q8IWA6 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC23.17■■□□□ 1.3
CCDC60Q8IWA6 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC60Q8IWA6 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC60Q8IWA6 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC60Q8IWA6 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC60Q8IWA6 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC60Q8IWA6 SAPCD2P1-201ENST00000395413 1184 ntBASIC23.16■■□□□ 1.3
CCDC60Q8IWA6 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC60Q8IWA6 AL355472.2-201ENST00000422958 438 ntBASIC23.16■■□□□ 1.3
CCDC60Q8IWA6 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC23.16■■□□□ 1.3
CCDC60Q8IWA6 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC23.16■■□□□ 1.3
CCDC60Q8IWA6 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC60Q8IWA6 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC60Q8IWA6 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
CCDC60Q8IWA6 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC23.16■■□□□ 1.3
CCDC60Q8IWA6 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC23.15■■□□□ 1.3
CCDC60Q8IWA6 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC60Q8IWA6 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC60Q8IWA6 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC60Q8IWA6 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC60Q8IWA6 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC23.15■■□□□ 1.3
CCDC60Q8IWA6 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC23.15■■□□□ 1.3
CCDC60Q8IWA6 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC23.15■■□□□ 1.3
CCDC60Q8IWA6 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC60Q8IWA6 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC23.15■■□□□ 1.3
CCDC60Q8IWA6 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC60Q8IWA6 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
CCDC60Q8IWA6 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC60Q8IWA6 Z98882.1-201ENST00000622160 2253 ntBASIC23.15■■□□□ 1.3
CCDC60Q8IWA6 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
CCDC60Q8IWA6 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC23.14■■□□□ 1.3
CCDC60Q8IWA6 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
CCDC60Q8IWA6 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC23.14■■□□□ 1.3
CCDC60Q8IWA6 KRT17P1-201ENST00000399211 1546 ntBASIC23.14■■□□□ 1.3
CCDC60Q8IWA6 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
CCDC60Q8IWA6 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC60Q8IWA6 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC23.14■■□□□ 1.29
CCDC60Q8IWA6 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC23.14■■□□□ 1.29
CCDC60Q8IWA6 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC23.14■■□□□ 1.29
CCDC60Q8IWA6 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC23.14■■□□□ 1.29
CCDC60Q8IWA6 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC23.14■■□□□ 1.29
CCDC60Q8IWA6 MYC-209ENST00000641252 345 ntBASIC23.14■■□□□ 1.29
CCDC60Q8IWA6 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC23.14■■□□□ 1.29
CCDC60Q8IWA6 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
CCDC60Q8IWA6 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC23.14■■□□□ 1.29
CCDC60Q8IWA6 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC23.14■■□□□ 1.29
CCDC60Q8IWA6 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms