Protein–RNA interactions for Protein: Q6VVB1

NHLRC1, E3 ubiquitin-protein ligase NHLRC1, humanhuman

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC1Q6VVB1 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.65■□□□□ 0.58
NHLRC1Q6VVB1 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NHLRC1Q6VVB1 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC18.65■□□□□ 0.58
NHLRC1Q6VVB1 PLD4-205ENST00000553861 667 ntTSL 2 BASIC18.65■□□□□ 0.58
NHLRC1Q6VVB1 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC18.65■□□□□ 0.58
NHLRC1Q6VVB1 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NHLRC1Q6VVB1 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.65■□□□□ 0.58
NHLRC1Q6VVB1 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NHLRC1Q6VVB1 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NHLRC1Q6VVB1 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NHLRC1Q6VVB1 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NHLRC1Q6VVB1 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
NHLRC1Q6VVB1 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
NHLRC1Q6VVB1 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.58
NHLRC1Q6VVB1 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
NHLRC1Q6VVB1 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
NHLRC1Q6VVB1 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
NHLRC1Q6VVB1 NAA20-201ENST00000310450 920 ntTSL 2 BASIC18.64■□□□□ 0.57
NHLRC1Q6VVB1 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.64■□□□□ 0.57
NHLRC1Q6VVB1 POU5F1P4-201ENST00000413175 1085 ntBASIC18.64■□□□□ 0.57
NHLRC1Q6VVB1 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC18.64■□□□□ 0.57
NHLRC1Q6VVB1 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC18.64■□□□□ 0.57
NHLRC1Q6VVB1 AC019069.1-201ENST00000610008 1333 ntBASIC18.64■□□□□ 0.57
NHLRC1Q6VVB1 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NHLRC1Q6VVB1 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
NHLRC1Q6VVB1 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.64■□□□□ 0.57
NHLRC1Q6VVB1 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC18.64■□□□□ 0.57
NHLRC1Q6VVB1 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NHLRC1Q6VVB1 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NHLRC1Q6VVB1 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NHLRC1Q6VVB1 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
NHLRC1Q6VVB1 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
NHLRC1Q6VVB1 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.63■□□□□ 0.57
NHLRC1Q6VVB1 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
NHLRC1Q6VVB1 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NHLRC1Q6VVB1 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NHLRC1Q6VVB1 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.63■□□□□ 0.57
NHLRC1Q6VVB1 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC18.63■□□□□ 0.57
NHLRC1Q6VVB1 AP001160.3-201ENST00000601484 763 ntBASIC18.63■□□□□ 0.57
NHLRC1Q6VVB1 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
NHLRC1Q6VVB1 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NHLRC1Q6VVB1 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NHLRC1Q6VVB1 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NHLRC1Q6VVB1 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NHLRC1Q6VVB1 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NHLRC1Q6VVB1 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
NHLRC1Q6VVB1 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NHLRC1Q6VVB1 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.62■□□□□ 0.57
NHLRC1Q6VVB1 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NHLRC1Q6VVB1 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC18.62■□□□□ 0.57
NHLRC1Q6VVB1 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NHLRC1Q6VVB1 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NHLRC1Q6VVB1 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
NHLRC1Q6VVB1 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
NHLRC1Q6VVB1 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NHLRC1Q6VVB1 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.62■□□□□ 0.57
NHLRC1Q6VVB1 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NHLRC1Q6VVB1 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
NHLRC1Q6VVB1 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.62■□□□□ 0.57
NHLRC1Q6VVB1 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.62■□□□□ 0.57
NHLRC1Q6VVB1 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
NHLRC1Q6VVB1 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 AC034268.1-201ENST00000441047 882 ntBASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 TESC-206ENST00000541210 936 ntTSL 3 BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
NHLRC1Q6VVB1 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.6■□□□□ 0.57
NHLRC1Q6VVB1 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NHLRC1Q6VVB1 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
NHLRC1Q6VVB1 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NHLRC1Q6VVB1 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NHLRC1Q6VVB1 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.6■□□□□ 0.57
NHLRC1Q6VVB1 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.6■□□□□ 0.57
NHLRC1Q6VVB1 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NHLRC1Q6VVB1 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NHLRC1Q6VVB1 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NHLRC1Q6VVB1 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NHLRC1Q6VVB1 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NHLRC1Q6VVB1 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms