Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.93■□□□□ 0.78
TRIM40Q6P9F5 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.93■□□□□ 0.78
TRIM40Q6P9F5 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM40Q6P9F5 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC19.93■□□□□ 0.78
TRIM40Q6P9F5 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM40Q6P9F5 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM40Q6P9F5 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.93■□□□□ 0.78
TRIM40Q6P9F5 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.93■□□□□ 0.78
TRIM40Q6P9F5 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
TRIM40Q6P9F5 KRT18P61-201ENST00000585825 1298 ntBASIC19.93■□□□□ 0.78
TRIM40Q6P9F5 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM40Q6P9F5 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM40Q6P9F5 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM40Q6P9F5 KRT16P2-201ENST00000414673 1423 ntBASIC19.93■□□□□ 0.78
TRIM40Q6P9F5 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TRIM40Q6P9F5 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM40Q6P9F5 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM40Q6P9F5 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.92■□□□□ 0.78
TRIM40Q6P9F5 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM40Q6P9F5 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
TRIM40Q6P9F5 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM40Q6P9F5 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.92■□□□□ 0.78
TRIM40Q6P9F5 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.92■□□□□ 0.78
TRIM40Q6P9F5 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.92■□□□□ 0.78
TRIM40Q6P9F5 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.92■□□□□ 0.78
TRIM40Q6P9F5 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM40Q6P9F5 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.92■□□□□ 0.78
TRIM40Q6P9F5 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM40Q6P9F5 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM40Q6P9F5 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM40Q6P9F5 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM40Q6P9F5 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM40Q6P9F5 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM40Q6P9F5 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
TRIM40Q6P9F5 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.92■□□□□ 0.78
TRIM40Q6P9F5 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM40Q6P9F5 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
TRIM40Q6P9F5 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
TRIM40Q6P9F5 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM40Q6P9F5 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.91■□□□□ 0.78
TRIM40Q6P9F5 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
TRIM40Q6P9F5 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.91■□□□□ 0.78
TRIM40Q6P9F5 AL162430.1-201ENST00000480705 870 ntBASIC19.91■□□□□ 0.78
TRIM40Q6P9F5 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
TRIM40Q6P9F5 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
TRIM40Q6P9F5 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
TRIM40Q6P9F5 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM40Q6P9F5 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM40Q6P9F5 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
TRIM40Q6P9F5 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM40Q6P9F5 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM40Q6P9F5 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM40Q6P9F5 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM40Q6P9F5 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM40Q6P9F5 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.9■□□□□ 0.78
TRIM40Q6P9F5 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.9■□□□□ 0.78
TRIM40Q6P9F5 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.9■□□□□ 0.78
TRIM40Q6P9F5 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM40Q6P9F5 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM40Q6P9F5 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
TRIM40Q6P9F5 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.9■□□□□ 0.78
TRIM40Q6P9F5 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
TRIM40Q6P9F5 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC19.9■□□□□ 0.78
TRIM40Q6P9F5 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.9■□□□□ 0.78
TRIM40Q6P9F5 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
TRIM40Q6P9F5 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
TRIM40Q6P9F5 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
TRIM40Q6P9F5 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
TRIM40Q6P9F5 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.78
TRIM40Q6P9F5 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM40Q6P9F5 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM40Q6P9F5 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM40Q6P9F5 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.89■□□□□ 0.77
TRIM40Q6P9F5 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.89■□□□□ 0.77
TRIM40Q6P9F5 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.89■□□□□ 0.77
TRIM40Q6P9F5 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM40Q6P9F5 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
TRIM40Q6P9F5 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
TRIM40Q6P9F5 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
TRIM40Q6P9F5 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.88■□□□□ 0.77
TRIM40Q6P9F5 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM40Q6P9F5 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
TRIM40Q6P9F5 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM40Q6P9F5 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM40Q6P9F5 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM40Q6P9F5 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM40Q6P9F5 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
TRIM40Q6P9F5 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM40Q6P9F5 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM40Q6P9F5 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
TRIM40Q6P9F5 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.88■□□□□ 0.77
TRIM40Q6P9F5 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM40Q6P9F5 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
TRIM40Q6P9F5 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
TRIM40Q6P9F5 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC19.88■□□□□ 0.77
TRIM40Q6P9F5 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM40Q6P9F5 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
TRIM40Q6P9F5 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
TRIM40Q6P9F5 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
TRIM40Q6P9F5 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms