Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC24.08■■□□□ 1.44
KRT40Q6A162 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
KRT40Q6A162 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC24.08■■□□□ 1.44
KRT40Q6A162 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
KRT40Q6A162 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
KRT40Q6A162 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC24.07■■□□□ 1.44
KRT40Q6A162 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
KRT40Q6A162 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
KRT40Q6A162 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
KRT40Q6A162 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC24.07■■□□□ 1.44
KRT40Q6A162 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
KRT40Q6A162 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC24.07■■□□□ 1.44
KRT40Q6A162 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
KRT40Q6A162 AC006015.1-201ENST00000429970 570 ntBASIC24.07■■□□□ 1.44
KRT40Q6A162 MAP2K4P1-201ENST00000438453 1195 ntBASIC24.07■■□□□ 1.44
KRT40Q6A162 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC24.07■■□□□ 1.44
KRT40Q6A162 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC24.07■■□□□ 1.44
KRT40Q6A162 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
KRT40Q6A162 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC24.07■■□□□ 1.44
KRT40Q6A162 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC24.07■■□□□ 1.44
KRT40Q6A162 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC24.07■■□□□ 1.44
KRT40Q6A162 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC24.07■■□□□ 1.44
KRT40Q6A162 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
KRT40Q6A162 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
KRT40Q6A162 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
KRT40Q6A162 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
KRT40Q6A162 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC24.06■■□□□ 1.44
KRT40Q6A162 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
KRT40Q6A162 AL355802.2-201ENST00000402069 882 ntBASIC24.06■■□□□ 1.44
KRT40Q6A162 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC24.06■■□□□ 1.44
KRT40Q6A162 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC24.06■■□□□ 1.44
KRT40Q6A162 TESC-206ENST00000541210 936 ntTSL 3 BASIC24.06■■□□□ 1.44
KRT40Q6A162 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC24.06■■□□□ 1.44
KRT40Q6A162 AP001160.3-201ENST00000601484 763 ntBASIC24.06■■□□□ 1.44
KRT40Q6A162 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
KRT40Q6A162 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC24.06■■□□□ 1.44
KRT40Q6A162 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
KRT40Q6A162 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC24.06■■□□□ 1.44
KRT40Q6A162 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
KRT40Q6A162 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
KRT40Q6A162 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
KRT40Q6A162 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC24.05■■□□□ 1.44
KRT40Q6A162 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
KRT40Q6A162 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC24.05■■□□□ 1.44
KRT40Q6A162 TMEM191A-211ENST00000637163 1067 ntBASIC24.05■■□□□ 1.44
KRT40Q6A162 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
KRT40Q6A162 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
KRT40Q6A162 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
KRT40Q6A162 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
KRT40Q6A162 PLK5-205ENST00000642079 1969 ntBASIC24.05■■□□□ 1.44
KRT40Q6A162 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
KRT40Q6A162 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC24.05■■□□□ 1.44
KRT40Q6A162 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
KRT40Q6A162 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
KRT40Q6A162 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
KRT40Q6A162 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC24.04■■□□□ 1.44
KRT40Q6A162 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
KRT40Q6A162 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
KRT40Q6A162 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC24.04■■□□□ 1.44
KRT40Q6A162 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
KRT40Q6A162 PPP1R14BP3-201ENST00000509033 445 ntBASIC24.04■■□□□ 1.44
KRT40Q6A162 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC24.04■■□□□ 1.44
KRT40Q6A162 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC24.04■■□□□ 1.44
KRT40Q6A162 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC24.04■■□□□ 1.44
KRT40Q6A162 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC24.04■■□□□ 1.44
KRT40Q6A162 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
KRT40Q6A162 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
KRT40Q6A162 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
KRT40Q6A162 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
KRT40Q6A162 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
KRT40Q6A162 SLC7A5P2-201ENST00000553010 536 ntBASIC24.03■■□□□ 1.44
KRT40Q6A162 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC24.03■■□□□ 1.44
KRT40Q6A162 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC24.03■■□□□ 1.44
KRT40Q6A162 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC24.03■■□□□ 1.44
KRT40Q6A162 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC24.03■■□□□ 1.44
KRT40Q6A162 AC066615.1-201ENST00000640911 628 ntBASIC24.03■■□□□ 1.44
KRT40Q6A162 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC24.03■■□□□ 1.44
KRT40Q6A162 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
KRT40Q6A162 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC24.03■■□□□ 1.44
KRT40Q6A162 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
KRT40Q6A162 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC24.02■■□□□ 1.44
KRT40Q6A162 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC24.02■■□□□ 1.44
KRT40Q6A162 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
KRT40Q6A162 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.44
KRT40Q6A162 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC24.02■■□□□ 1.44
KRT40Q6A162 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC24.02■■□□□ 1.44
KRT40Q6A162 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
KRT40Q6A162 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
KRT40Q6A162 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC24.02■■□□□ 1.44
KRT40Q6A162 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
KRT40Q6A162 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
KRT40Q6A162 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC24.01■■□□□ 1.43
KRT40Q6A162 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
KRT40Q6A162 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC24.01■■□□□ 1.43
KRT40Q6A162 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
KRT40Q6A162 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
KRT40Q6A162 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
KRT40Q6A162 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
KRT40Q6A162 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC24.01■■□□□ 1.43
KRT40Q6A162 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms