Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 OXCT2P1-201ENST00000447263 1535 ntBASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC17.15■□□□□ 0.34
PDLIM3Q53GG5 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.34
PDLIM3Q53GG5 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC17.14■□□□□ 0.34
PDLIM3Q53GG5 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.34
PDLIM3Q53GG5 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
PDLIM3Q53GG5 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PDLIM3Q53GG5 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PDLIM3Q53GG5 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PDLIM3Q53GG5 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PDLIM3Q53GG5 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PDLIM3Q53GG5 AC006970.2-201ENST00000450065 779 ntBASIC17.14■□□□□ 0.33
PDLIM3Q53GG5 OR2I1P-207ENST00000453522 948 ntBASIC17.14■□□□□ 0.33
PDLIM3Q53GG5 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC17.14■□□□□ 0.33
PDLIM3Q53GG5 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC17.14■□□□□ 0.33
PDLIM3Q53GG5 AC126544.1-201ENST00000580842 1059 ntBASIC17.14■□□□□ 0.33
PDLIM3Q53GG5 pRNA.6-201ENST00000610482 90 ntBASIC17.14■□□□□ 0.33
PDLIM3Q53GG5 pRNA.5-201ENST00000612139 90 ntBASIC17.14■□□□□ 0.33
PDLIM3Q53GG5 pRNA.11-201ENST00000618423 90 ntBASIC17.14■□□□□ 0.33
PDLIM3Q53GG5 pRNA.13-201ENST00000619112 90 ntBASIC17.14■□□□□ 0.33
PDLIM3Q53GG5 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC17.14■□□□□ 0.33
PDLIM3Q53GG5 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC17.14■□□□□ 0.33
PDLIM3Q53GG5 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PDLIM3Q53GG5 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PDLIM3Q53GG5 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PDLIM3Q53GG5 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PDLIM3Q53GG5 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PDLIM3Q53GG5 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PDLIM3Q53GG5 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PDLIM3Q53GG5 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.13■□□□□ 0.33
PDLIM3Q53GG5 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
PDLIM3Q53GG5 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC17.13■□□□□ 0.33
PDLIM3Q53GG5 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC17.13■□□□□ 0.33
PDLIM3Q53GG5 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
PDLIM3Q53GG5 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC17.13■□□□□ 0.33
PDLIM3Q53GG5 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PDLIM3Q53GG5 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PDLIM3Q53GG5 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PDLIM3Q53GG5 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC17.13■□□□□ 0.33
PDLIM3Q53GG5 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC17.13■□□□□ 0.33
PDLIM3Q53GG5 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PDLIM3Q53GG5 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PDLIM3Q53GG5 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PDLIM3Q53GG5 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
PDLIM3Q53GG5 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PDLIM3Q53GG5 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PDLIM3Q53GG5 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PDLIM3Q53GG5 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
PDLIM3Q53GG5 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
PDLIM3Q53GG5 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
PDLIM3Q53GG5 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PDLIM3Q53GG5 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
PDLIM3Q53GG5 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PDLIM3Q53GG5 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PDLIM3Q53GG5 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PDLIM3Q53GG5 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC17.12■□□□□ 0.33
PDLIM3Q53GG5 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PDLIM3Q53GG5 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
PDLIM3Q53GG5 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PDLIM3Q53GG5 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
PDLIM3Q53GG5 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PDLIM3Q53GG5 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PDLIM3Q53GG5 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC17.12■□□□□ 0.33
PDLIM3Q53GG5 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PDLIM3Q53GG5 TSPY26P-201ENST00000476365 1326 ntBASIC17.12■□□□□ 0.33
PDLIM3Q53GG5 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PDLIM3Q53GG5 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PDLIM3Q53GG5 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC17.12■□□□□ 0.33
PDLIM3Q53GG5 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC17.12■□□□□ 0.33
PDLIM3Q53GG5 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PDLIM3Q53GG5 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PDLIM3Q53GG5 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 AC006455.2-201ENST00000429931 906 ntBASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 MIR6084-201ENST00000622012 110 ntBASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 AC087239.1-201ENST00000622671 572 ntBASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC17.11■□□□□ 0.33
PDLIM3Q53GG5 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms