Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH2P43246 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH2P43246 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH2P43246 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH2P43246 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH2P43246 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH2P43246 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
MSH2P43246 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH2P43246 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH2P43246 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
MSH2P43246 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
MSH2P43246 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
MSH2P43246 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.07■□□□□ 0.96
MSH2P43246 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.07■□□□□ 0.96
MSH2P43246 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.07■□□□□ 0.96
MSH2P43246 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.07■□□□□ 0.96
MSH2P43246 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.07■□□□□ 0.96
MSH2P43246 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH2P43246 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH2P43246 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
MSH2P43246 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC21.07■□□□□ 0.96
MSH2P43246 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH2P43246 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.07■□□□□ 0.96
MSH2P43246 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
MSH2P43246 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.07■□□□□ 0.96
MSH2P43246 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
MSH2P43246 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH2P43246 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
MSH2P43246 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH2P43246 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
MSH2P43246 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH2P43246 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH2P43246 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
MSH2P43246 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
MSH2P43246 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
MSH2P43246 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
MSH2P43246 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.06■□□□□ 0.96
MSH2P43246 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.06■□□□□ 0.96
MSH2P43246 SMUG1P1-201ENST00000590640 811 ntBASIC21.06■□□□□ 0.96
MSH2P43246 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.06■□□□□ 0.96
MSH2P43246 SF1-220ENST00000626028 704 ntTSL 2 BASIC21.06■□□□□ 0.96
MSH2P43246 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC21.06■□□□□ 0.96
MSH2P43246 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
MSH2P43246 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
MSH2P43246 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
MSH2P43246 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC21.06■□□□□ 0.96
MSH2P43246 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
MSH2P43246 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC21.06■□□□□ 0.96
MSH2P43246 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
MSH2P43246 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
MSH2P43246 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH2P43246 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH2P43246 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.05■□□□□ 0.96
MSH2P43246 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
MSH2P43246 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH2P43246 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.05■□□□□ 0.96
MSH2P43246 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
MSH2P43246 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH2P43246 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH2P43246 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.05■□□□□ 0.96
MSH2P43246 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH2P43246 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
MSH2P43246 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.04■□□□□ 0.96
MSH2P43246 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
MSH2P43246 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH2P43246 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH2P43246 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
MSH2P43246 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
MSH2P43246 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
MSH2P43246 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH2P43246 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
MSH2P43246 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.04■□□□□ 0.96
MSH2P43246 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.04■□□□□ 0.96
MSH2P43246 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.04■□□□□ 0.96
MSH2P43246 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH2P43246 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
MSH2P43246 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH2P43246 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
MSH2P43246 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
MSH2P43246 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
MSH2P43246 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
MSH2P43246 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH2P43246 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
MSH2P43246 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.03■□□□□ 0.96
MSH2P43246 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
MSH2P43246 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH2P43246 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH2P43246 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.03■□□□□ 0.96
MSH2P43246 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.03■□□□□ 0.96
MSH2P43246 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
MSH2P43246 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.03■□□□□ 0.96
MSH2P43246 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH2P43246 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
MSH2P43246 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH2P43246 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH2P43246 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC21.03■□□□□ 0.96
MSH2P43246 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC21.03■□□□□ 0.96
MSH2P43246 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC21.03■□□□□ 0.96
MSH2P43246 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
MSH2P43246 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms