Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN4P29074 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN4P29074 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.78■□□□□ 0.92
PTPN4P29074 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN4P29074 LINC02228-203ENST00000641970 1355 ntBASIC20.78■□□□□ 0.92
PTPN4P29074 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN4P29074 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN4P29074 AL137784.2-201ENST00000607332 1000 ntBASIC20.78■□□□□ 0.92
PTPN4P29074 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
PTPN4P29074 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.78■□□□□ 0.92
PTPN4P29074 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN4P29074 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN4P29074 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN4P29074 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN4P29074 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
PTPN4P29074 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN4P29074 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
PTPN4P29074 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
PTPN4P29074 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PTPN4P29074 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.77■□□□□ 0.92
PTPN4P29074 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.77■□□□□ 0.92
PTPN4P29074 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.77■□□□□ 0.92
PTPN4P29074 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC20.77■□□□□ 0.92
PTPN4P29074 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.77■□□□□ 0.92
PTPN4P29074 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.77■□□□□ 0.92
PTPN4P29074 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.92
PTPN4P29074 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PTPN4P29074 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PTPN4P29074 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.77■□□□□ 0.92
PTPN4P29074 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
PTPN4P29074 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.77■□□□□ 0.92
PTPN4P29074 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PTPN4P29074 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC20.77■□□□□ 0.92
PTPN4P29074 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PTPN4P29074 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PTPN4P29074 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.77■□□□□ 0.92
PTPN4P29074 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
PTPN4P29074 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PTPN4P29074 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
PTPN4P29074 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
PTPN4P29074 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.77■□□□□ 0.92
PTPN4P29074 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.77■□□□□ 0.91
PTPN4P29074 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
PTPN4P29074 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
PTPN4P29074 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.77■□□□□ 0.91
PTPN4P29074 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.76■□□□□ 0.91
PTPN4P29074 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTPN4P29074 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.76■□□□□ 0.91
PTPN4P29074 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTPN4P29074 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
PTPN4P29074 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
PTPN4P29074 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTPN4P29074 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PTPN4P29074 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.76■□□□□ 0.91
PTPN4P29074 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC20.76■□□□□ 0.91
PTPN4P29074 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.76■□□□□ 0.91
PTPN4P29074 AC105233.4-201ENST00000642045 216 ntBASIC20.76■□□□□ 0.91
PTPN4P29074 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.76■□□□□ 0.91
PTPN4P29074 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTPN4P29074 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTPN4P29074 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PTPN4P29074 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
PTPN4P29074 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTPN4P29074 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTPN4P29074 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PTPN4P29074 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PTPN4P29074 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PTPN4P29074 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PTPN4P29074 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PTPN4P29074 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PTPN4P29074 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
PTPN4P29074 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.75■□□□□ 0.91
PTPN4P29074 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
PTPN4P29074 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.75■□□□□ 0.91
PTPN4P29074 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.75■□□□□ 0.91
PTPN4P29074 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PTPN4P29074 KRT18P14-201ENST00000534205 1250 ntBASIC20.75■□□□□ 0.91
PTPN4P29074 TERF1P2-201ENST00000583350 1212 ntBASIC20.75■□□□□ 0.91
PTPN4P29074 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.75■□□□□ 0.91
PTPN4P29074 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PTPN4P29074 RARRES2P11-201ENST00000635158 484 ntBASIC20.75■□□□□ 0.91
PTPN4P29074 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
PTPN4P29074 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PTPN4P29074 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
PTPN4P29074 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PTPN4P29074 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PTPN4P29074 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.75■□□□□ 0.91
PTPN4P29074 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.74■□□□□ 0.91
PTPN4P29074 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
PTPN4P29074 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PTPN4P29074 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
PTPN4P29074 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PTPN4P29074 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.74■□□□□ 0.91
PTPN4P29074 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.74■□□□□ 0.91
PTPN4P29074 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.74■□□□□ 0.91
PTPN4P29074 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC20.74■□□□□ 0.91
PTPN4P29074 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.74■□□□□ 0.91
PTPN4P29074 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
PTPN4P29074 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.74■□□□□ 0.91
PTPN4P29074 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms