Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DMBP28068 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DMBP28068 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DMBP28068 AC006128.1-201ENST00000624704 1661 ntBASIC15.8■□□□□ 0.12
HLA-DMBP28068 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DMBP28068 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
HLA-DMBP28068 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
HLA-DMBP28068 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC15.8■□□□□ 0.12
HLA-DMBP28068 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DMBP28068 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
HLA-DMBP28068 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC15.8■□□□□ 0.12
HLA-DMBP28068 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DMBP28068 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC15.8■□□□□ 0.12
HLA-DMBP28068 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DMBP28068 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC15.8■□□□□ 0.12
HLA-DMBP28068 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DMBP28068 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DMBP28068 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DMBP28068 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DMBP28068 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
HLA-DMBP28068 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
HLA-DMBP28068 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HLA-DMBP28068 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC15.8■□□□□ 0.12
HLA-DMBP28068 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC15.79■□□□□ 0.12
HLA-DMBP28068 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
HLA-DMBP28068 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DMBP28068 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC15.79■□□□□ 0.12
HLA-DMBP28068 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC15.79■□□□□ 0.12
HLA-DMBP28068 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DMBP28068 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DMBP28068 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC15.79■□□□□ 0.12
HLA-DMBP28068 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DMBP28068 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
HLA-DMBP28068 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DMBP28068 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DMBP28068 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
HLA-DMBP28068 RHOF-204ENST00000537265 699 ntTSL 2 BASIC15.79■□□□□ 0.12
HLA-DMBP28068 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
HLA-DMBP28068 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DMBP28068 RARG-204ENST00000543726 1779 ntTSL 2 BASIC15.79■□□□□ 0.12
HLA-DMBP28068 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
HLA-DMBP28068 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DMBP28068 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
HLA-DMBP28068 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
HLA-DMBP28068 BX005040.4-201ENST00000637145 1518 ntBASIC15.78■□□□□ 0.12
HLA-DMBP28068 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DMBP28068 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC15.78■□□□□ 0.12
HLA-DMBP28068 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DMBP28068 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC15.78■□□□□ 0.12
HLA-DMBP28068 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
HLA-DMBP28068 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC15.78■□□□□ 0.12
HLA-DMBP28068 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC15.78■□□□□ 0.12
HLA-DMBP28068 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DMBP28068 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DMBP28068 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
HLA-DMBP28068 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
HLA-DMBP28068 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC15.78■□□□□ 0.12
HLA-DMBP28068 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC15.78■□□□□ 0.12
HLA-DMBP28068 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DMBP28068 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DMBP28068 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DMBP28068 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
HLA-DMBP28068 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DMBP28068 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HLA-DMBP28068 AC073314.1-201ENST00000568729 2216 ntBASIC15.78■□□□□ 0.12
HLA-DMBP28068 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DMBP28068 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC15.77■□□□□ 0.12
HLA-DMBP28068 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DMBP28068 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
HLA-DMBP28068 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DMBP28068 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DMBP28068 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DMBP28068 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC15.77■□□□□ 0.12
HLA-DMBP28068 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
HLA-DMBP28068 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC15.77■□□□□ 0.12
HLA-DMBP28068 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
HLA-DMBP28068 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC15.77■□□□□ 0.12
HLA-DMBP28068 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC15.77■□□□□ 0.12
HLA-DMBP28068 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DMBP28068 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
HLA-DMBP28068 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
HLA-DMBP28068 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
HLA-DMBP28068 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
HLA-DMBP28068 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC15.77■□□□□ 0.12
HLA-DMBP28068 AC026271.2-201ENST00000428091 497 ntBASIC15.77■□□□□ 0.12
HLA-DMBP28068 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC15.77■□□□□ 0.12
HLA-DMBP28068 AL391422.3-201ENST00000603791 2761 ntBASIC15.77■□□□□ 0.11
HLA-DMBP28068 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HLA-DMBP28068 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
HLA-DMBP28068 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.11
HLA-DMBP28068 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
HLA-DMBP28068 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.11
HLA-DMBP28068 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
HLA-DMBP28068 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HLA-DMBP28068 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
HLA-DMBP28068 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
HLA-DMBP28068 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC15.77■□□□□ 0.11
HLA-DMBP28068 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC15.76■□□□□ 0.11
HLA-DMBP28068 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC15.76■□□□□ 0.11
HLA-DMBP28068 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms