Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RARRES2P4-201ENST00000514074 484 ntBASIC21.97■■□□□ 1.11
BDNFP23560 PHB2-213ENST00000546111 858 ntTSL 2 BASIC21.97■■□□□ 1.11
BDNFP23560 AC142086.2-201ENST00000569753 217 ntBASIC21.97■■□□□ 1.11
BDNFP23560 PFKL-212ENST00000628044 129 ntTSL 3 BASIC21.97■■□□□ 1.11
BDNFP23560 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.97■■□□□ 1.11
BDNFP23560 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
BDNFP23560 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC21.97■■□□□ 1.11
BDNFP23560 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC21.97■■□□□ 1.11
BDNFP23560 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
BDNFP23560 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
BDNFP23560 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
BDNFP23560 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
BDNFP23560 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
BDNFP23560 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
BDNFP23560 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
BDNFP23560 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.96■■□□□ 1.11
BDNFP23560 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
BDNFP23560 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
BDNFP23560 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
BDNFP23560 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
BDNFP23560 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
BDNFP23560 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
BDNFP23560 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
BDNFP23560 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
BDNFP23560 AL512625.2-201ENST00000417533 625 ntBASIC21.96■■□□□ 1.11
BDNFP23560 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
BDNFP23560 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC21.96■■□□□ 1.11
BDNFP23560 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC21.96■■□□□ 1.11
BDNFP23560 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.96■■□□□ 1.11
BDNFP23560 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.96■■□□□ 1.11
BDNFP23560 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC21.96■■□□□ 1.11
BDNFP23560 MARS-234ENST00000630571 216 ntTSL 5 BASIC21.96■■□□□ 1.11
BDNFP23560 MARS-235ENST00000630803 183 ntTSL 3 BASIC21.96■■□□□ 1.11
BDNFP23560 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.96■■□□□ 1.11
BDNFP23560 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
BDNFP23560 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC21.96■■□□□ 1.11
BDNFP23560 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
BDNFP23560 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
BDNFP23560 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
BDNFP23560 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
BDNFP23560 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
BDNFP23560 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.96■■□□□ 1.11
BDNFP23560 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.11
BDNFP23560 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.95■■□□□ 1.11
BDNFP23560 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
BDNFP23560 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21.95■■□□□ 1.1
BDNFP23560 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
BDNFP23560 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
BDNFP23560 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
BDNFP23560 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
BDNFP23560 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
BDNFP23560 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
BDNFP23560 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.95■■□□□ 1.1
BDNFP23560 Z98882.1-201ENST00000622160 2253 ntBASIC21.95■■□□□ 1.1
BDNFP23560 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
BDNFP23560 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
BDNFP23560 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.94■■□□□ 1.1
BDNFP23560 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
BDNFP23560 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
BDNFP23560 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
BDNFP23560 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
BDNFP23560 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
BDNFP23560 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
BDNFP23560 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
BDNFP23560 CDV3P1-201ENST00000471403 739 ntBASIC21.94■■□□□ 1.1
BDNFP23560 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
BDNFP23560 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
BDNFP23560 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
BDNFP23560 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
BDNFP23560 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.93■■□□□ 1.1
BDNFP23560 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.93■■□□□ 1.1
BDNFP23560 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
BDNFP23560 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
BDNFP23560 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
BDNFP23560 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.93■■□□□ 1.1
BDNFP23560 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
BDNFP23560 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
BDNFP23560 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.93■■□□□ 1.1
BDNFP23560 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC21.93■■□□□ 1.1
BDNFP23560 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
BDNFP23560 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
BDNFP23560 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.93■■□□□ 1.1
BDNFP23560 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
BDNFP23560 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
BDNFP23560 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC21.92■■□□□ 1.1
BDNFP23560 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
BDNFP23560 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.92■■□□□ 1.1
BDNFP23560 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC21.92■■□□□ 1.1
BDNFP23560 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC21.92■■□□□ 1.1
BDNFP23560 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.92■■□□□ 1.1
BDNFP23560 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.92■■□□□ 1.1
BDNFP23560 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC21.92■■□□□ 1.1
BDNFP23560 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
BDNFP23560 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.92■■□□□ 1.1
BDNFP23560 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC21.92■■□□□ 1.1
BDNFP23560 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
BDNFP23560 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
BDNFP23560 MIPEPP3-201ENST00000412105 444 ntBASIC21.92■■□□□ 1.1
BDNFP23560 CASP6-205ENST00000505486 538 ntTSL 4 BASIC21.92■■□□□ 1.1
BDNFP23560 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms