Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.84■□□□□ 0.93
VIMP08670 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VIMP08670 TSPY13P-201ENST00000338964 914 ntBASIC20.84■□□□□ 0.93
VIMP08670 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
VIMP08670 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
VIMP08670 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC20.84■□□□□ 0.93
VIMP08670 AC137630.3-201ENST00000607245 391 ntBASIC20.84■□□□□ 0.93
VIMP08670 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
VIMP08670 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.84■□□□□ 0.93
VIMP08670 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
VIMP08670 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
VIMP08670 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VIMP08670 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
VIMP08670 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
VIMP08670 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.83■□□□□ 0.93
VIMP08670 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.93
VIMP08670 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VIMP08670 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
VIMP08670 ATP5G2P3-201ENST00000429083 425 ntBASIC20.83■□□□□ 0.93
VIMP08670 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.83■□□□□ 0.93
VIMP08670 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VIMP08670 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
VIMP08670 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.83■□□□□ 0.92
VIMP08670 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC20.83■□□□□ 0.92
VIMP08670 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VIMP08670 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.83■□□□□ 0.92
VIMP08670 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VIMP08670 AC007225.1-201ENST00000566331 1836 ntBASIC20.83■□□□□ 0.92
VIMP08670 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
VIMP08670 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
VIMP08670 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.82■□□□□ 0.92
VIMP08670 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VIMP08670 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VIMP08670 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VIMP08670 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.82■□□□□ 0.92
VIMP08670 AC121338.2-201ENST00000622535 1744 ntBASIC20.82■□□□□ 0.92
VIMP08670 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VIMP08670 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.82■□□□□ 0.92
VIMP08670 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VIMP08670 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.82■□□□□ 0.92
VIMP08670 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.82■□□□□ 0.92
VIMP08670 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
VIMP08670 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
VIMP08670 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.82■□□□□ 0.92
VIMP08670 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VIMP08670 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VIMP08670 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VIMP08670 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VIMP08670 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VIMP08670 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.81■□□□□ 0.92
VIMP08670 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VIMP08670 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC20.81■□□□□ 0.92
VIMP08670 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
VIMP08670 AL512408.1-201ENST00000569378 2000 ntBASIC20.81■□□□□ 0.92
VIMP08670 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VIMP08670 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VIMP08670 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VIMP08670 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VIMP08670 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.81■□□□□ 0.92
VIMP08670 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
VIMP08670 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC20.8■□□□□ 0.92
VIMP08670 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC20.8■□□□□ 0.92
VIMP08670 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
VIMP08670 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
VIMP08670 AC018445.3-201ENST00000624177 1945 ntBASIC20.8■□□□□ 0.92
VIMP08670 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
VIMP08670 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VIMP08670 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VIMP08670 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC20.8■□□□□ 0.92
VIMP08670 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VIMP08670 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
VIMP08670 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
VIMP08670 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC20.8■□□□□ 0.92
VIMP08670 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC20.8■□□□□ 0.92
VIMP08670 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
VIMP08670 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC20.8■□□□□ 0.92
VIMP08670 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
VIMP08670 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.8■□□□□ 0.92
VIMP08670 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
VIMP08670 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC20.8■□□□□ 0.92
VIMP08670 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
VIMP08670 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
VIMP08670 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.79■□□□□ 0.92
VIMP08670 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
VIMP08670 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VIMP08670 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.79■□□□□ 0.92
VIMP08670 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
VIMP08670 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
VIMP08670 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VIMP08670 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
VIMP08670 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
VIMP08670 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC20.79■□□□□ 0.92
VIMP08670 MIR4508-201ENST00000584178 70 ntBASIC20.79■□□□□ 0.92
VIMP08670 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC20.79■□□□□ 0.92
VIMP08670 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC20.79■□□□□ 0.92
VIMP08670 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC20.79■□□□□ 0.92
VIMP08670 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
VIMP08670 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.79■□□□□ 0.92
VIMP08670 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
VIMP08670 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms