Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.77■□□□□ 0.76
CPSF4O95639 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.77■□□□□ 0.76
CPSF4O95639 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
CPSF4O95639 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.77■□□□□ 0.76
CPSF4O95639 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.77■□□□□ 0.75
CPSF4O95639 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
CPSF4O95639 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CPSF4O95639 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CPSF4O95639 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.76■□□□□ 0.75
CPSF4O95639 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CPSF4O95639 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.76■□□□□ 0.75
CPSF4O95639 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CPSF4O95639 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CPSF4O95639 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CPSF4O95639 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CPSF4O95639 NALT1-201ENST00000429224 738 ntTSL 5 BASIC19.76■□□□□ 0.75
CPSF4O95639 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.76■□□□□ 0.75
CPSF4O95639 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.76■□□□□ 0.75
CPSF4O95639 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CPSF4O95639 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
CPSF4O95639 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC19.76■□□□□ 0.75
CPSF4O95639 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CPSF4O95639 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
CPSF4O95639 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CPSF4O95639 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CPSF4O95639 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CPSF4O95639 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
CPSF4O95639 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CPSF4O95639 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
CPSF4O95639 MIR939-201ENST00000401314 82 ntBASIC19.75■□□□□ 0.75
CPSF4O95639 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.75■□□□□ 0.75
CPSF4O95639 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.75■□□□□ 0.75
CPSF4O95639 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.75■□□□□ 0.75
CPSF4O95639 AC121338.2-201ENST00000622535 1744 ntBASIC19.75■□□□□ 0.75
CPSF4O95639 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
CPSF4O95639 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.75■□□□□ 0.75
CPSF4O95639 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CPSF4O95639 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CPSF4O95639 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CPSF4O95639 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
CPSF4O95639 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CPSF4O95639 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CPSF4O95639 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CPSF4O95639 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CPSF4O95639 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CPSF4O95639 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CPSF4O95639 EBPL-204ENST00000378272 766 ntTSL 3 BASIC19.74■□□□□ 0.75
CPSF4O95639 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CPSF4O95639 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.74■□□□□ 0.75
CPSF4O95639 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
CPSF4O95639 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CPSF4O95639 AC092667.1-201ENST00000434301 2586 ntBASIC19.74■□□□□ 0.75
CPSF4O95639 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CPSF4O95639 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CPSF4O95639 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CPSF4O95639 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CPSF4O95639 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CPSF4O95639 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CPSF4O95639 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CPSF4O95639 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.73■□□□□ 0.75
CPSF4O95639 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.73■□□□□ 0.75
CPSF4O95639 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CPSF4O95639 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.73■□□□□ 0.75
CPSF4O95639 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
CPSF4O95639 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CPSF4O95639 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.73■□□□□ 0.75
CPSF4O95639 AL136967.2-201ENST00000623968 743 ntBASIC19.73■□□□□ 0.75
CPSF4O95639 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CPSF4O95639 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CPSF4O95639 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CPSF4O95639 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
CPSF4O95639 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.73■□□□□ 0.75
CPSF4O95639 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CPSF4O95639 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.73■□□□□ 0.75
CPSF4O95639 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CPSF4O95639 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CPSF4O95639 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CPSF4O95639 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CPSF4O95639 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CPSF4O95639 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CPSF4O95639 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CPSF4O95639 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CPSF4O95639 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CPSF4O95639 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CPSF4O95639 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CPSF4O95639 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CPSF4O95639 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.72■□□□□ 0.75
CPSF4O95639 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.72■□□□□ 0.75
CPSF4O95639 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CPSF4O95639 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CPSF4O95639 AC091305.1-201ENST00000479476 895 ntBASIC19.72■□□□□ 0.75
CPSF4O95639 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CPSF4O95639 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CPSF4O95639 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
CPSF4O95639 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.72■□□□□ 0.75
CPSF4O95639 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC19.72■□□□□ 0.75
CPSF4O95639 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC19.72■□□□□ 0.75
CPSF4O95639 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
CPSF4O95639 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.72■□□□□ 0.75
CPSF4O95639 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms