Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SEMA3DO95025 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SEMA3DO95025 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SEMA3DO95025 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
SEMA3DO95025 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SEMA3DO95025 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SEMA3DO95025 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SEMA3DO95025 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.87■□□□□ 0.77
SEMA3DO95025 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.87■□□□□ 0.77
SEMA3DO95025 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
SEMA3DO95025 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.87■□□□□ 0.77
SEMA3DO95025 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SEMA3DO95025 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.87■□□□□ 0.77
SEMA3DO95025 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SEMA3DO95025 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SEMA3DO95025 KRT18P20-201ENST00000548986 1279 ntBASIC19.87■□□□□ 0.77
SEMA3DO95025 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC19.87■□□□□ 0.77
SEMA3DO95025 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.87■□□□□ 0.77
SEMA3DO95025 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
SEMA3DO95025 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SEMA3DO95025 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.87■□□□□ 0.77
SEMA3DO95025 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SEMA3DO95025 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SEMA3DO95025 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
SEMA3DO95025 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.86■□□□□ 0.77
SEMA3DO95025 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC19.86■□□□□ 0.77
SEMA3DO95025 AC004854.2-201ENST00000608450 1441 ntBASIC19.86■□□□□ 0.77
SEMA3DO95025 AC073130.3-201ENST00000624389 2278 ntBASIC19.86■□□□□ 0.77
SEMA3DO95025 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SEMA3DO95025 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
SEMA3DO95025 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
SEMA3DO95025 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SEMA3DO95025 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
SEMA3DO95025 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
SEMA3DO95025 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.86■□□□□ 0.77
SEMA3DO95025 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SEMA3DO95025 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.86■□□□□ 0.77
SEMA3DO95025 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.86■□□□□ 0.77
SEMA3DO95025 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.86■□□□□ 0.77
SEMA3DO95025 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
SEMA3DO95025 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.85■□□□□ 0.77
SEMA3DO95025 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SEMA3DO95025 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SEMA3DO95025 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SEMA3DO95025 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
SEMA3DO95025 AC097381.1-201ENST00000429019 1296 ntBASIC19.85■□□□□ 0.77
SEMA3DO95025 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SEMA3DO95025 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
SEMA3DO95025 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.85■□□□□ 0.77
SEMA3DO95025 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
SEMA3DO95025 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SEMA3DO95025 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
SEMA3DO95025 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.85■□□□□ 0.77
SEMA3DO95025 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.85■□□□□ 0.77
SEMA3DO95025 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SEMA3DO95025 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SEMA3DO95025 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SEMA3DO95025 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SEMA3DO95025 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SEMA3DO95025 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.84■□□□□ 0.77
SEMA3DO95025 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SEMA3DO95025 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SEMA3DO95025 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SEMA3DO95025 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SEMA3DO95025 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
SEMA3DO95025 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.84■□□□□ 0.77
SEMA3DO95025 MIR6821-201ENST00000617625 74 ntBASIC19.84■□□□□ 0.77
SEMA3DO95025 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SEMA3DO95025 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SEMA3DO95025 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
SEMA3DO95025 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.84■□□□□ 0.77
SEMA3DO95025 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SEMA3DO95025 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SEMA3DO95025 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SEMA3DO95025 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
SEMA3DO95025 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SEMA3DO95025 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.83■□□□□ 0.77
SEMA3DO95025 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SEMA3DO95025 KRT19P1-201ENST00000405746 1186 ntBASIC19.83■□□□□ 0.77
SEMA3DO95025 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
SEMA3DO95025 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
SEMA3DO95025 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.83■□□□□ 0.77
SEMA3DO95025 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.83■□□□□ 0.77
SEMA3DO95025 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.83■□□□□ 0.77
SEMA3DO95025 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
SEMA3DO95025 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
SEMA3DO95025 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SEMA3DO95025 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SEMA3DO95025 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SEMA3DO95025 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
SEMA3DO95025 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SEMA3DO95025 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SEMA3DO95025 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SEMA3DO95025 AC034268.1-201ENST00000441047 882 ntBASIC19.82■□□□□ 0.76
SEMA3DO95025 AC245052.3-201ENST00000450182 901 ntBASIC19.82■□□□□ 0.76
SEMA3DO95025 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC19.82■□□□□ 0.76
SEMA3DO95025 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.82■□□□□ 0.76
SEMA3DO95025 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC19.82■□□□□ 0.76
SEMA3DO95025 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
SEMA3DO95025 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms