Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 MBP-237ENST00000579129 1052 ntTSL 5 BASIC16.73■□□□□ 0.27
HMGB3O15347 AC104564.3-201ENST00000582367 638 ntBASIC16.73■□□□□ 0.27
HMGB3O15347 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC16.73■□□□□ 0.27
HMGB3O15347 PKD1P1-201ENST00000458669 6805 ntBASIC16.73■□□□□ 0.27
HMGB3O15347 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB3O15347 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB3O15347 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB3O15347 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB3O15347 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB3O15347 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
HMGB3O15347 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
HMGB3O15347 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
HMGB3O15347 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
HMGB3O15347 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB3O15347 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC16.72■□□□□ 0.27
HMGB3O15347 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB3O15347 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC16.72■□□□□ 0.27
HMGB3O15347 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
HMGB3O15347 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC16.72■□□□□ 0.27
HMGB3O15347 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC16.72■□□□□ 0.27
HMGB3O15347 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC16.72■□□□□ 0.27
HMGB3O15347 PVT1_1.1-201ENST00000615125 194 ntBASIC16.72■□□□□ 0.27
HMGB3O15347 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC16.72■□□□□ 0.27
HMGB3O15347 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB3O15347 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB3O15347 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB3O15347 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB3O15347 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.72■□□□□ 0.27
HMGB3O15347 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB3O15347 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
HMGB3O15347 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC16.72■□□□□ 0.27
HMGB3O15347 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC16.72■□□□□ 0.27
HMGB3O15347 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB3O15347 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB3O15347 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB3O15347 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
HMGB3O15347 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB3O15347 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
HMGB3O15347 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB3O15347 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB3O15347 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGB3O15347 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC16.71■□□□□ 0.27
HMGB3O15347 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB3O15347 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB3O15347 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB3O15347 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB3O15347 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
HMGB3O15347 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.71■□□□□ 0.26
HMGB3O15347 AC005703.6-201ENST00000623265 1329 ntBASIC16.7■□□□□ 0.26
HMGB3O15347 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
HMGB3O15347 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB3O15347 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB3O15347 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB3O15347 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
HMGB3O15347 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB3O15347 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB3O15347 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
HMGB3O15347 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB3O15347 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC16.7■□□□□ 0.26
HMGB3O15347 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
HMGB3O15347 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
HMGB3O15347 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB3O15347 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC16.7■□□□□ 0.26
HMGB3O15347 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB3O15347 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB3O15347 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB3O15347 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB3O15347 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB3O15347 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB3O15347 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB3O15347 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
HMGB3O15347 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
HMGB3O15347 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB3O15347 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB3O15347 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB3O15347 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC16.69■□□□□ 0.26
HMGB3O15347 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB3O15347 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB3O15347 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB3O15347 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
HMGB3O15347 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB3O15347 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB3O15347 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB3O15347 NKILA-201ENST00000613231 537 ntTSL 4 BASIC16.69■□□□□ 0.26
HMGB3O15347 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB3O15347 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
HMGB3O15347 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB3O15347 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB3O15347 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC16.69■□□□□ 0.26
HMGB3O15347 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB3O15347 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC16.69■□□□□ 0.26
HMGB3O15347 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB3O15347 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB3O15347 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
HMGB3O15347 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
HMGB3O15347 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB3O15347 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
HMGB3O15347 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
HMGB3O15347 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
HMGB3O15347 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 26.5 ms