Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDX4O14627 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDX4O14627 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CDX4O14627 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CDX4O14627 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
CDX4O14627 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.25■□□□□ 0.83
CDX4O14627 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC20.25■□□□□ 0.83
CDX4O14627 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CDX4O14627 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CDX4O14627 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC20.25■□□□□ 0.83
CDX4O14627 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDX4O14627 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.25■□□□□ 0.83
CDX4O14627 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC20.25■□□□□ 0.83
CDX4O14627 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC20.25■□□□□ 0.83
CDX4O14627 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.25■□□□□ 0.83
CDX4O14627 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.25■□□□□ 0.83
CDX4O14627 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CDX4O14627 AL445228.2-201ENST00000605589 952 ntBASIC20.25■□□□□ 0.83
CDX4O14627 AC113410.3-201ENST00000623366 203 ntBASIC20.25■□□□□ 0.83
CDX4O14627 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDX4O14627 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
CDX4O14627 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDX4O14627 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDX4O14627 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.24■□□□□ 0.83
CDX4O14627 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDX4O14627 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDX4O14627 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDX4O14627 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC20.24■□□□□ 0.83
CDX4O14627 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDX4O14627 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDX4O14627 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDX4O14627 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC20.24■□□□□ 0.83
CDX4O14627 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CDX4O14627 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CDX4O14627 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.24■□□□□ 0.83
CDX4O14627 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.24■□□□□ 0.83
CDX4O14627 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.24■□□□□ 0.83
CDX4O14627 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDX4O14627 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CDX4O14627 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC20.24■□□□□ 0.83
CDX4O14627 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CDX4O14627 CYP21A1P-202ENST00000354927 1481 ntBASIC20.24■□□□□ 0.83
CDX4O14627 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CDX4O14627 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CDX4O14627 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.23■□□□□ 0.83
CDX4O14627 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.23■□□□□ 0.83
CDX4O14627 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDX4O14627 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDX4O14627 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDX4O14627 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDX4O14627 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CDX4O14627 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.23■□□□□ 0.83
CDX4O14627 AC007322.3-201ENST00000426526 701 ntBASIC20.23■□□□□ 0.83
CDX4O14627 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC20.23■□□□□ 0.83
CDX4O14627 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.23■□□□□ 0.83
CDX4O14627 AL355075.4-201ENST00000554988 638 ntBASIC20.23■□□□□ 0.83
CDX4O14627 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.23■□□□□ 0.83
CDX4O14627 AL135905.2-201ENST00000584934 1404 ntBASIC20.23■□□□□ 0.83
CDX4O14627 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CDX4O14627 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CDX4O14627 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.23■□□□□ 0.83
CDX4O14627 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC20.22■□□□□ 0.83
CDX4O14627 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDX4O14627 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDX4O14627 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDX4O14627 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.22■□□□□ 0.83
CDX4O14627 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDX4O14627 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDX4O14627 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.22■□□□□ 0.83
CDX4O14627 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.22■□□□□ 0.83
CDX4O14627 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDX4O14627 AC105020.6-201ENST00000621523 1217 ntBASIC20.22■□□□□ 0.83
CDX4O14627 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDX4O14627 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CDX4O14627 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.21■□□□□ 0.83
CDX4O14627 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.21■□□□□ 0.83
CDX4O14627 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDX4O14627 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDX4O14627 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDX4O14627 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDX4O14627 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.21■□□□□ 0.83
CDX4O14627 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.21■□□□□ 0.83
CDX4O14627 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CDX4O14627 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CDX4O14627 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC20.21■□□□□ 0.83
CDX4O14627 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CDX4O14627 AC110285.5-201ENST00000611501 352 ntBASIC20.21■□□□□ 0.83
CDX4O14627 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.21■□□□□ 0.83
CDX4O14627 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.21■□□□□ 0.83
CDX4O14627 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CDX4O14627 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
CDX4O14627 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CDX4O14627 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CDX4O14627 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.2■□□□□ 0.82
CDX4O14627 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDX4O14627 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDX4O14627 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDX4O14627 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
CDX4O14627 AC239809.2-201ENST00000415381 517 ntBASIC20.2■□□□□ 0.82
CDX4O14627 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms