Protein–RNA interactions for Protein: O14562

UBFD1, Ubiquitin domain-containing protein UBFD1, humanhuman

Known RBP Predictions only

Length 309 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBFD1O14562 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
UBFD1O14562 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.2■□□□□ 0.82
UBFD1O14562 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
UBFD1O14562 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
UBFD1O14562 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
UBFD1O14562 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
UBFD1O14562 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
UBFD1O14562 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
UBFD1O14562 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
UBFD1O14562 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.19■□□□□ 0.82
UBFD1O14562 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
UBFD1O14562 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
UBFD1O14562 EBPL-204ENST00000378272 766 ntTSL 3 BASIC20.19■□□□□ 0.82
UBFD1O14562 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
UBFD1O14562 TPRG1LP1-201ENST00000598702 760 ntBASIC20.19■□□□□ 0.82
UBFD1O14562 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.19■□□□□ 0.82
UBFD1O14562 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
UBFD1O14562 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.18■□□□□ 0.82
UBFD1O14562 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
UBFD1O14562 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBFD1O14562 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.18■□□□□ 0.82
UBFD1O14562 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
UBFD1O14562 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
UBFD1O14562 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBFD1O14562 AC020907.5-201ENST00000624372 1936 ntBASIC20.18■□□□□ 0.82
UBFD1O14562 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBFD1O14562 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBFD1O14562 SUDS3P1-201ENST00000505831 966 ntBASIC20.18■□□□□ 0.82
UBFD1O14562 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.18■□□□□ 0.82
UBFD1O14562 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.18■□□□□ 0.82
UBFD1O14562 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBFD1O14562 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
UBFD1O14562 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
UBFD1O14562 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBFD1O14562 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
UBFD1O14562 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
UBFD1O14562 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
UBFD1O14562 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.17■□□□□ 0.82
UBFD1O14562 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
UBFD1O14562 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
UBFD1O14562 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
UBFD1O14562 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
UBFD1O14562 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
UBFD1O14562 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
UBFD1O14562 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.17■□□□□ 0.82
UBFD1O14562 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.17■□□□□ 0.82
UBFD1O14562 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.16■□□□□ 0.82
UBFD1O14562 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
UBFD1O14562 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
UBFD1O14562 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
UBFD1O14562 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
UBFD1O14562 FP700111.2-201ENST00000619190 1892 ntBASIC20.16■□□□□ 0.82
UBFD1O14562 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
UBFD1O14562 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
UBFD1O14562 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
UBFD1O14562 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.16■□□□□ 0.82
UBFD1O14562 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
UBFD1O14562 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.16■□□□□ 0.82
UBFD1O14562 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.16■□□□□ 0.82
UBFD1O14562 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
UBFD1O14562 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC20.16■□□□□ 0.82
UBFD1O14562 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
UBFD1O14562 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
UBFD1O14562 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
UBFD1O14562 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
UBFD1O14562 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
UBFD1O14562 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.16■□□□□ 0.82
UBFD1O14562 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
UBFD1O14562 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBFD1O14562 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
UBFD1O14562 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.15■□□□□ 0.82
UBFD1O14562 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.15■□□□□ 0.82
UBFD1O14562 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.15■□□□□ 0.82
UBFD1O14562 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBFD1O14562 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBFD1O14562 PCDHAC2-203ENST00000615316 3011 ntBASIC20.15■□□□□ 0.82
UBFD1O14562 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC20.15■□□□□ 0.82
UBFD1O14562 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.15■□□□□ 0.82
UBFD1O14562 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBFD1O14562 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBFD1O14562 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.15■□□□□ 0.82
UBFD1O14562 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBFD1O14562 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBFD1O14562 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC20.15■□□□□ 0.82
UBFD1O14562 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBFD1O14562 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.15■□□□□ 0.82
UBFD1O14562 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
UBFD1O14562 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
UBFD1O14562 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.15■□□□□ 0.82
UBFD1O14562 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
UBFD1O14562 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
UBFD1O14562 AC011484.1-201ENST00000377652 1995 ntBASIC20.14■□□□□ 0.81
UBFD1O14562 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
UBFD1O14562 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC20.14■□□□□ 0.81
UBFD1O14562 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC20.14■□□□□ 0.81
UBFD1O14562 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
UBFD1O14562 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC20.14■□□□□ 0.81
UBFD1O14562 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
UBFD1O14562 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
UBFD1O14562 AP004607.4-201ENST00000530158 1459 ntBASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms