Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM38O00635 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM38O00635 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
TRIM38O00635 FXN-202ENST00000396364 980 ntTSL 5 BASIC20.86■□□□□ 0.93
TRIM38O00635 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM38O00635 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM38O00635 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM38O00635 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
TRIM38O00635 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM38O00635 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.86■□□□□ 0.93
TRIM38O00635 OR7E47P-201ENST00000546390 1422 ntBASIC20.86■□□□□ 0.93
TRIM38O00635 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM38O00635 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
TRIM38O00635 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM38O00635 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM38O00635 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM38O00635 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM38O00635 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC20.85■□□□□ 0.93
TRIM38O00635 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM38O00635 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM38O00635 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM38O00635 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.85■□□□□ 0.93
TRIM38O00635 AF201337.1-201ENST00000520239 748 ntBASIC20.85■□□□□ 0.93
TRIM38O00635 KRT18P20-201ENST00000548986 1279 ntBASIC20.85■□□□□ 0.93
TRIM38O00635 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.85■□□□□ 0.93
TRIM38O00635 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM38O00635 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
TRIM38O00635 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM38O00635 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM38O00635 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
TRIM38O00635 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM38O00635 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM38O00635 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM38O00635 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM38O00635 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM38O00635 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
TRIM38O00635 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM38O00635 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
TRIM38O00635 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
TRIM38O00635 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM38O00635 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.84■□□□□ 0.93
TRIM38O00635 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM38O00635 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.84■□□□□ 0.93
TRIM38O00635 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM38O00635 APTR-203ENST00000430801 583 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM38O00635 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC20.84■□□□□ 0.93
TRIM38O00635 AC105036.2-201ENST00000569468 176 ntBASIC20.84■□□□□ 0.93
TRIM38O00635 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.84■□□□□ 0.93
TRIM38O00635 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.84■□□□□ 0.93
TRIM38O00635 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
TRIM38O00635 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM38O00635 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM38O00635 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.84■□□□□ 0.93
TRIM38O00635 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.83■□□□□ 0.93
TRIM38O00635 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM38O00635 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
TRIM38O00635 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.83■□□□□ 0.93
TRIM38O00635 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC20.83■□□□□ 0.93
TRIM38O00635 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.93
TRIM38O00635 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM38O00635 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC20.83■□□□□ 0.93
TRIM38O00635 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM38O00635 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM38O00635 AC133552.2-202ENST00000575694 574 ntBASIC20.83■□□□□ 0.93
TRIM38O00635 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC20.83■□□□□ 0.93
TRIM38O00635 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM38O00635 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM38O00635 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM38O00635 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM38O00635 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC20.83■□□□□ 0.92
TRIM38O00635 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.83■□□□□ 0.92
TRIM38O00635 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.82■□□□□ 0.92
TRIM38O00635 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM38O00635 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM38O00635 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM38O00635 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.82■□□□□ 0.92
TRIM38O00635 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM38O00635 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM38O00635 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM38O00635 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC20.82■□□□□ 0.92
TRIM38O00635 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.82■□□□□ 0.92
TRIM38O00635 AC069152.1-201ENST00000438030 544 ntBASIC20.82■□□□□ 0.92
TRIM38O00635 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.82■□□□□ 0.92
TRIM38O00635 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM38O00635 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM38O00635 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
TRIM38O00635 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM38O00635 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM38O00635 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.82■□□□□ 0.92
TRIM38O00635 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM38O00635 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM38O00635 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM38O00635 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM38O00635 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC20.81■□□□□ 0.92
TRIM38O00635 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM38O00635 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.81■□□□□ 0.92
TRIM38O00635 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM38O00635 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.81■□□□□ 0.92
TRIM38O00635 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
TRIM38O00635 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms