Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGN4O00479 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGN4O00479 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGN4O00479 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HMGN4O00479 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.34■□□□□ 0.69
HMGN4O00479 SERP1-208ENST00000491660 830 ntTSL 2 BASIC19.34■□□□□ 0.69
HMGN4O00479 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.34■□□□□ 0.69
HMGN4O00479 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.34■□□□□ 0.69
HMGN4O00479 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HMGN4O00479 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HMGN4O00479 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGN4O00479 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HMGN4O00479 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HMGN4O00479 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC19.34■□□□□ 0.69
HMGN4O00479 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
HMGN4O00479 LINC02228-203ENST00000641970 1355 ntBASIC19.33■□□□□ 0.69
HMGN4O00479 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.69
HMGN4O00479 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.33■□□□□ 0.69
HMGN4O00479 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC19.33■□□□□ 0.69
HMGN4O00479 AC007225.1-201ENST00000566331 1836 ntBASIC19.33■□□□□ 0.69
HMGN4O00479 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HMGN4O00479 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HMGN4O00479 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.33■□□□□ 0.68
HMGN4O00479 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.33■□□□□ 0.68
HMGN4O00479 AC138907.5-202ENST00000569484 235 ntBASIC19.33■□□□□ 0.68
HMGN4O00479 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.33■□□□□ 0.68
HMGN4O00479 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.33■□□□□ 0.68
HMGN4O00479 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.68
HMGN4O00479 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HMGN4O00479 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
HMGN4O00479 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.33■□□□□ 0.68
HMGN4O00479 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HMGN4O00479 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
HMGN4O00479 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
HMGN4O00479 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HMGN4O00479 GABARAPL3-202ENST00000624044 1851 ntBASIC19.33■□□□□ 0.68
HMGN4O00479 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
HMGN4O00479 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGN4O00479 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HMGN4O00479 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HMGN4O00479 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGN4O00479 AC011484.1-201ENST00000377652 1995 ntBASIC19.32■□□□□ 0.68
HMGN4O00479 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGN4O00479 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC19.32■□□□□ 0.68
HMGN4O00479 AK1-201ENST00000223836 736 ntTSL 3 BASIC19.32■□□□□ 0.68
HMGN4O00479 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGN4O00479 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
HMGN4O00479 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
HMGN4O00479 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC19.32■□□□□ 0.68
HMGN4O00479 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HMGN4O00479 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
HMGN4O00479 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGN4O00479 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGN4O00479 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.31■□□□□ 0.68
HMGN4O00479 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HMGN4O00479 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGN4O00479 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGN4O00479 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGN4O00479 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGN4O00479 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGN4O00479 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
HMGN4O00479 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGN4O00479 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGN4O00479 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGN4O00479 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.31■□□□□ 0.68
HMGN4O00479 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGN4O00479 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.31■□□□□ 0.68
HMGN4O00479 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGN4O00479 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HMGN4O00479 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.31■□□□□ 0.68
HMGN4O00479 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HMGN4O00479 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.31■□□□□ 0.68
HMGN4O00479 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HMGN4O00479 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGN4O00479 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
HMGN4O00479 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGN4O00479 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HMGN4O00479 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGN4O00479 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HMGN4O00479 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGN4O00479 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGN4O00479 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.3■□□□□ 0.68
HMGN4O00479 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.3■□□□□ 0.68
HMGN4O00479 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.3■□□□□ 0.68
HMGN4O00479 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
HMGN4O00479 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGN4O00479 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
HMGN4O00479 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.3■□□□□ 0.68
HMGN4O00479 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
HMGN4O00479 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
HMGN4O00479 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
HMGN4O00479 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.29■□□□□ 0.68
HMGN4O00479 AC027702.1-201ENST00000563810 1770 ntBASIC19.29■□□□□ 0.68
HMGN4O00479 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGN4O00479 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGN4O00479 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.29■□□□□ 0.68
HMGN4O00479 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HMGN4O00479 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HMGN4O00479 AC123595.1-201ENST00000440769 1046 ntBASIC19.29■□□□□ 0.68
HMGN4O00479 AC010141.2-201ENST00000452426 721 ntBASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms