Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 NME4-211ENST00000620944 1193 ntTSL 2 BASIC18.8■□□□□ 0.6
HIF3AQ9Y2N7 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC18.8■□□□□ 0.6
HIF3AQ9Y2N7 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.8■□□□□ 0.6
HIF3AQ9Y2N7 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HIF3AQ9Y2N7 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC18.8■□□□□ 0.6
HIF3AQ9Y2N7 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.8■□□□□ 0.6
HIF3AQ9Y2N7 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HIF3AQ9Y2N7 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
HIF3AQ9Y2N7 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HIF3AQ9Y2N7 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HIF3AQ9Y2N7 AC006128.1-201ENST00000624704 1661 ntBASIC18.79■□□□□ 0.6
HIF3AQ9Y2N7 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC18.79■□□□□ 0.6
HIF3AQ9Y2N7 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HIF3AQ9Y2N7 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HIF3AQ9Y2N7 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HIF3AQ9Y2N7 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
HIF3AQ9Y2N7 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HIF3AQ9Y2N7 IRS3P-201ENST00000223076 1006 ntBASIC18.79■□□□□ 0.6
HIF3AQ9Y2N7 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
HIF3AQ9Y2N7 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HIF3AQ9Y2N7 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HIF3AQ9Y2N7 STOX2-205ENST00000513034 807 ntTSL 3 BASIC18.79■□□□□ 0.6
HIF3AQ9Y2N7 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC18.79■□□□□ 0.6
HIF3AQ9Y2N7 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
HIF3AQ9Y2N7 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HIF3AQ9Y2N7 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HIF3AQ9Y2N7 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HIF3AQ9Y2N7 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HIF3AQ9Y2N7 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HIF3AQ9Y2N7 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
HIF3AQ9Y2N7 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
HIF3AQ9Y2N7 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HIF3AQ9Y2N7 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC18.78■□□□□ 0.6
HIF3AQ9Y2N7 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
HIF3AQ9Y2N7 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HIF3AQ9Y2N7 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HIF3AQ9Y2N7 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HIF3AQ9Y2N7 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HIF3AQ9Y2N7 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HIF3AQ9Y2N7 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC18.78■□□□□ 0.6
HIF3AQ9Y2N7 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC18.78■□□□□ 0.6
HIF3AQ9Y2N7 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.78■□□□□ 0.6
HIF3AQ9Y2N7 MIR6084-201ENST00000622012 110 ntBASIC18.78■□□□□ 0.6
HIF3AQ9Y2N7 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HIF3AQ9Y2N7 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HIF3AQ9Y2N7 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
HIF3AQ9Y2N7 PLK5-205ENST00000642079 1969 ntBASIC18.78■□□□□ 0.6
HIF3AQ9Y2N7 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
HIF3AQ9Y2N7 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HIF3AQ9Y2N7 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.77■□□□□ 0.6
HIF3AQ9Y2N7 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
HIF3AQ9Y2N7 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
HIF3AQ9Y2N7 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HIF3AQ9Y2N7 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HIF3AQ9Y2N7 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HIF3AQ9Y2N7 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HIF3AQ9Y2N7 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HIF3AQ9Y2N7 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HIF3AQ9Y2N7 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
HIF3AQ9Y2N7 AC027612.3-201ENST00000413684 1047 ntBASIC18.77■□□□□ 0.6
HIF3AQ9Y2N7 AC105265.2-201ENST00000467189 838 ntBASIC18.77■□□□□ 0.6
HIF3AQ9Y2N7 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
HIF3AQ9Y2N7 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC18.77■□□□□ 0.6
HIF3AQ9Y2N7 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.77■□□□□ 0.6
HIF3AQ9Y2N7 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
HIF3AQ9Y2N7 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
HIF3AQ9Y2N7 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
HIF3AQ9Y2N7 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
HIF3AQ9Y2N7 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
HIF3AQ9Y2N7 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
HIF3AQ9Y2N7 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HIF3AQ9Y2N7 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
HIF3AQ9Y2N7 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
HIF3AQ9Y2N7 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HIF3AQ9Y2N7 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HIF3AQ9Y2N7 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HIF3AQ9Y2N7 AC079140.4-201ENST00000507448 529 ntBASIC18.76■□□□□ 0.59
HIF3AQ9Y2N7 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HIF3AQ9Y2N7 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
HIF3AQ9Y2N7 AP004607.4-201ENST00000530158 1459 ntBASIC18.76■□□□□ 0.59
HIF3AQ9Y2N7 KRT87P-202ENST00000534226 1464 ntBASIC18.76■□□□□ 0.59
HIF3AQ9Y2N7 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
HIF3AQ9Y2N7 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
HIF3AQ9Y2N7 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.76■□□□□ 0.59
HIF3AQ9Y2N7 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC18.75■□□□□ 0.59
HIF3AQ9Y2N7 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HIF3AQ9Y2N7 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
HIF3AQ9Y2N7 AC121338.2-201ENST00000622535 1744 ntBASIC18.75■□□□□ 0.59
HIF3AQ9Y2N7 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HIF3AQ9Y2N7 AL157384.1-201ENST00000445995 2473 ntBASIC18.75■□□□□ 0.59
HIF3AQ9Y2N7 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HIF3AQ9Y2N7 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
HIF3AQ9Y2N7 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
HIF3AQ9Y2N7 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
HIF3AQ9Y2N7 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
HIF3AQ9Y2N7 AC061975.6-201ENST00000579045 1553 ntBASIC18.75■□□□□ 0.59
HIF3AQ9Y2N7 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
HIF3AQ9Y2N7 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
HIF3AQ9Y2N7 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.75■□□□□ 0.59
HIF3AQ9Y2N7 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms