Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.35■□□□□ 0.69
USE1Q9NZ43 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USE1Q9NZ43 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USE1Q9NZ43 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.35■□□□□ 0.69
USE1Q9NZ43 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
USE1Q9NZ43 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
USE1Q9NZ43 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
USE1Q9NZ43 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USE1Q9NZ43 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
USE1Q9NZ43 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
USE1Q9NZ43 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USE1Q9NZ43 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USE1Q9NZ43 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USE1Q9NZ43 HES6-204ENST00000409182 863 ntTSL 2 BASIC19.34■□□□□ 0.69
USE1Q9NZ43 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USE1Q9NZ43 AC010141.3-201ENST00000456659 717 ntBASIC19.34■□□□□ 0.69
USE1Q9NZ43 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
USE1Q9NZ43 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC19.34■□□□□ 0.69
USE1Q9NZ43 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USE1Q9NZ43 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
USE1Q9NZ43 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
USE1Q9NZ43 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.34■□□□□ 0.69
USE1Q9NZ43 AL162377.1-201ENST00000618844 1793 ntBASIC19.34■□□□□ 0.69
USE1Q9NZ43 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
USE1Q9NZ43 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.34■□□□□ 0.69
USE1Q9NZ43 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.33■□□□□ 0.69
USE1Q9NZ43 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.33■□□□□ 0.69
USE1Q9NZ43 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.33■□□□□ 0.69
USE1Q9NZ43 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.33■□□□□ 0.69
USE1Q9NZ43 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.33■□□□□ 0.69
USE1Q9NZ43 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
USE1Q9NZ43 TFPT-201ENST00000391757 774 ntTSL 5 BASIC19.33■□□□□ 0.68
USE1Q9NZ43 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
USE1Q9NZ43 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USE1Q9NZ43 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
USE1Q9NZ43 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USE1Q9NZ43 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
USE1Q9NZ43 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
USE1Q9NZ43 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
USE1Q9NZ43 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
USE1Q9NZ43 AC007225.1-201ENST00000566331 1836 ntBASIC19.32■□□□□ 0.68
USE1Q9NZ43 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
USE1Q9NZ43 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.32■□□□□ 0.68
USE1Q9NZ43 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USE1Q9NZ43 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USE1Q9NZ43 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
USE1Q9NZ43 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
USE1Q9NZ43 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
USE1Q9NZ43 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
USE1Q9NZ43 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
USE1Q9NZ43 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USE1Q9NZ43 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
USE1Q9NZ43 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC19.32■□□□□ 0.68
USE1Q9NZ43 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USE1Q9NZ43 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.32■□□□□ 0.68
USE1Q9NZ43 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.32■□□□□ 0.68
USE1Q9NZ43 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.32■□□□□ 0.68
USE1Q9NZ43 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USE1Q9NZ43 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USE1Q9NZ43 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.32■□□□□ 0.68
USE1Q9NZ43 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.32■□□□□ 0.68
USE1Q9NZ43 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.32■□□□□ 0.68
USE1Q9NZ43 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.32■□□□□ 0.68
USE1Q9NZ43 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USE1Q9NZ43 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USE1Q9NZ43 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
USE1Q9NZ43 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC19.31■□□□□ 0.68
USE1Q9NZ43 AC121338.2-201ENST00000622535 1744 ntBASIC19.31■□□□□ 0.68
USE1Q9NZ43 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.31■□□□□ 0.68
USE1Q9NZ43 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
USE1Q9NZ43 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USE1Q9NZ43 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USE1Q9NZ43 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
USE1Q9NZ43 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
USE1Q9NZ43 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USE1Q9NZ43 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
USE1Q9NZ43 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
USE1Q9NZ43 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
USE1Q9NZ43 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
USE1Q9NZ43 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.31■□□□□ 0.68
USE1Q9NZ43 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.31■□□□□ 0.68
USE1Q9NZ43 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
USE1Q9NZ43 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USE1Q9NZ43 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.3■□□□□ 0.68
USE1Q9NZ43 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
USE1Q9NZ43 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
USE1Q9NZ43 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USE1Q9NZ43 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USE1Q9NZ43 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
USE1Q9NZ43 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USE1Q9NZ43 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.3■□□□□ 0.68
USE1Q9NZ43 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
USE1Q9NZ43 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
USE1Q9NZ43 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC19.3■□□□□ 0.68
USE1Q9NZ43 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC19.3■□□□□ 0.68
USE1Q9NZ43 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC19.3■□□□□ 0.68
USE1Q9NZ43 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC19.3■□□□□ 0.68
USE1Q9NZ43 MTDHP2-201ENST00000601468 714 ntBASIC19.3■□□□□ 0.68
USE1Q9NZ43 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC19.3■□□□□ 0.68
USE1Q9NZ43 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 56.3 ms