Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CUEDC1Q9NWM3 AC080038.1-201ENST00000611274 1154 ntBASIC20.15■□□□□ 0.82
CUEDC1Q9NWM3 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
CUEDC1Q9NWM3 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.15■□□□□ 0.82
CUEDC1Q9NWM3 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CUEDC1Q9NWM3 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CUEDC1Q9NWM3 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CUEDC1Q9NWM3 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
CUEDC1Q9NWM3 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CUEDC1Q9NWM3 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
CUEDC1Q9NWM3 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CUEDC1Q9NWM3 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.15■□□□□ 0.82
CUEDC1Q9NWM3 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CUEDC1Q9NWM3 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CUEDC1Q9NWM3 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 KRT18P20-201ENST00000548986 1279 ntBASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 TMEM191A-211ENST00000637163 1067 ntBASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CUEDC1Q9NWM3 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 AL137060.1-201ENST00000618151 2648 ntBASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 KRT16P2-201ENST00000414673 1423 ntBASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 AC016769.1-201ENST00000409132 1010 ntBASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 AC120498.10-201ENST00000621827 505 ntBASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 MYCNOS-205ENST00000641950 531 ntBASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
CUEDC1Q9NWM3 AC005229.4-201ENST00000610085 2198 ntBASIC20.12■□□□□ 0.81
CUEDC1Q9NWM3 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.12■□□□□ 0.81
CUEDC1Q9NWM3 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
CUEDC1Q9NWM3 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
CUEDC1Q9NWM3 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CUEDC1Q9NWM3 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
CUEDC1Q9NWM3 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CUEDC1Q9NWM3 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CUEDC1Q9NWM3 AC006015.1-201ENST00000429970 570 ntBASIC20.12■□□□□ 0.81
CUEDC1Q9NWM3 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.12■□□□□ 0.81
CUEDC1Q9NWM3 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.12■□□□□ 0.81
CUEDC1Q9NWM3 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.12■□□□□ 0.81
CUEDC1Q9NWM3 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.12■□□□□ 0.81
CUEDC1Q9NWM3 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.12■□□□□ 0.81
CUEDC1Q9NWM3 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CUEDC1Q9NWM3 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
CUEDC1Q9NWM3 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
CUEDC1Q9NWM3 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CUEDC1Q9NWM3 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CUEDC1Q9NWM3 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.12■□□□□ 0.81
CUEDC1Q9NWM3 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
CUEDC1Q9NWM3 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CUEDC1Q9NWM3 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CUEDC1Q9NWM3 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.11■□□□□ 0.81
CUEDC1Q9NWM3 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CUEDC1Q9NWM3 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CUEDC1Q9NWM3 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
CUEDC1Q9NWM3 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.11■□□□□ 0.81
CUEDC1Q9NWM3 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.11■□□□□ 0.81
CUEDC1Q9NWM3 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC20.11■□□□□ 0.81
CUEDC1Q9NWM3 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CUEDC1Q9NWM3 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CUEDC1Q9NWM3 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.1■□□□□ 0.81
CUEDC1Q9NWM3 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CUEDC1Q9NWM3 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms