Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDH9Q9HC56 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
PCDH9Q9HC56 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC21.51■■□□□ 1.03
PCDH9Q9HC56 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC21.51■■□□□ 1.03
PCDH9Q9HC56 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.51■■□□□ 1.03
PCDH9Q9HC56 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PCDH9Q9HC56 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDH9Q9HC56 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PCDH9Q9HC56 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
PCDH9Q9HC56 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.51■■□□□ 1.03
PCDH9Q9HC56 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDH9Q9HC56 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDH9Q9HC56 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
PCDH9Q9HC56 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PCDH9Q9HC56 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDH9Q9HC56 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.5■■□□□ 1.03
PCDH9Q9HC56 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDH9Q9HC56 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
PCDH9Q9HC56 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PCDH9Q9HC56 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PCDH9Q9HC56 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PCDH9Q9HC56 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDH9Q9HC56 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PCDH9Q9HC56 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PCDH9Q9HC56 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
PCDH9Q9HC56 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PCDH9Q9HC56 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
PCDH9Q9HC56 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.5■■□□□ 1.03
PCDH9Q9HC56 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PCDH9Q9HC56 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.5■■□□□ 1.03
PCDH9Q9HC56 TERF1P2-201ENST00000583350 1212 ntBASIC21.5■■□□□ 1.03
PCDH9Q9HC56 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
PCDH9Q9HC56 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.5■■□□□ 1.03
PCDH9Q9HC56 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDH9Q9HC56 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
PCDH9Q9HC56 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
PCDH9Q9HC56 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 AC097381.1-201ENST00000429019 1296 ntBASIC21.49■■□□□ 1.03
PCDH9Q9HC56 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 CCDC92B-201ENST00000575506 885 ntBASIC21.49■■□□□ 1.03
PCDH9Q9HC56 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.49■■□□□ 1.03
PCDH9Q9HC56 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PCDH9Q9HC56 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.48■■□□□ 1.03
PCDH9Q9HC56 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDH9Q9HC56 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PCDH9Q9HC56 MIR6821-201ENST00000617625 74 ntBASIC21.48■■□□□ 1.03
PCDH9Q9HC56 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
PCDH9Q9HC56 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDH9Q9HC56 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
PCDH9Q9HC56 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PCDH9Q9HC56 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
PCDH9Q9HC56 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
PCDH9Q9HC56 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDH9Q9HC56 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.47■■□□□ 1.03
PCDH9Q9HC56 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.47■■□□□ 1.03
PCDH9Q9HC56 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDH9Q9HC56 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDH9Q9HC56 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.47■■□□□ 1.03
PCDH9Q9HC56 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDH9Q9HC56 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDH9Q9HC56 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDH9Q9HC56 RARRES2P6-201ENST00000567333 442 ntBASIC21.47■■□□□ 1.03
PCDH9Q9HC56 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.47■■□□□ 1.03
PCDH9Q9HC56 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDH9Q9HC56 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.47■■□□□ 1.03
PCDH9Q9HC56 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.47■■□□□ 1.03
PCDH9Q9HC56 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
PCDH9Q9HC56 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
PCDH9Q9HC56 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.47■■□□□ 1.03
PCDH9Q9HC56 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
PCDH9Q9HC56 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.46■■□□□ 1.03
PCDH9Q9HC56 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.46■■□□□ 1.03
PCDH9Q9HC56 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDH9Q9HC56 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PCDH9Q9HC56 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
PCDH9Q9HC56 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms