Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
USB1Q9BQ65 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
USB1Q9BQ65 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.52■□□□□ 0.55
USB1Q9BQ65 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.52■□□□□ 0.55
USB1Q9BQ65 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
USB1Q9BQ65 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USB1Q9BQ65 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC18.51■□□□□ 0.55
USB1Q9BQ65 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
USB1Q9BQ65 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USB1Q9BQ65 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USB1Q9BQ65 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USB1Q9BQ65 MFSD11-216ENST00000590393 1141 ntBASIC18.51■□□□□ 0.55
USB1Q9BQ65 AC012183.1-201ENST00000625197 499 ntBASIC18.51■□□□□ 0.55
USB1Q9BQ65 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.51■□□□□ 0.55
USB1Q9BQ65 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
USB1Q9BQ65 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USB1Q9BQ65 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
USB1Q9BQ65 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.51■□□□□ 0.55
USB1Q9BQ65 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
USB1Q9BQ65 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USB1Q9BQ65 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC18.5■□□□□ 0.55
USB1Q9BQ65 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
USB1Q9BQ65 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USB1Q9BQ65 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USB1Q9BQ65 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.5■□□□□ 0.55
USB1Q9BQ65 AC007322.1-201ENST00000426983 750 ntBASIC18.5■□□□□ 0.55
USB1Q9BQ65 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.5■□□□□ 0.55
USB1Q9BQ65 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USB1Q9BQ65 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.5■□□□□ 0.55
USB1Q9BQ65 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.5■□□□□ 0.55
USB1Q9BQ65 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
USB1Q9BQ65 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC18.5■□□□□ 0.55
USB1Q9BQ65 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USB1Q9BQ65 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
USB1Q9BQ65 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
USB1Q9BQ65 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC18.49■□□□□ 0.55
USB1Q9BQ65 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
USB1Q9BQ65 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
USB1Q9BQ65 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.49■□□□□ 0.55
USB1Q9BQ65 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
USB1Q9BQ65 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
USB1Q9BQ65 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USB1Q9BQ65 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
USB1Q9BQ65 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.49■□□□□ 0.55
USB1Q9BQ65 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USB1Q9BQ65 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
USB1Q9BQ65 AC006970.2-201ENST00000450065 779 ntBASIC18.49■□□□□ 0.55
USB1Q9BQ65 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.49■□□□□ 0.55
USB1Q9BQ65 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USB1Q9BQ65 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC18.49■□□□□ 0.55
USB1Q9BQ65 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.49■□□□□ 0.55
USB1Q9BQ65 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
USB1Q9BQ65 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
USB1Q9BQ65 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USB1Q9BQ65 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
USB1Q9BQ65 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
USB1Q9BQ65 KRT16P2-201ENST00000414673 1423 ntBASIC18.49■□□□□ 0.55
USB1Q9BQ65 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
USB1Q9BQ65 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
USB1Q9BQ65 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
USB1Q9BQ65 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
USB1Q9BQ65 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC18.48■□□□□ 0.55
USB1Q9BQ65 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
USB1Q9BQ65 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.48■□□□□ 0.55
USB1Q9BQ65 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
USB1Q9BQ65 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC18.48■□□□□ 0.55
USB1Q9BQ65 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC18.48■□□□□ 0.55
USB1Q9BQ65 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.48■□□□□ 0.55
USB1Q9BQ65 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.48■□□□□ 0.55
USB1Q9BQ65 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.48■□□□□ 0.55
USB1Q9BQ65 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.48■□□□□ 0.55
USB1Q9BQ65 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
USB1Q9BQ65 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
USB1Q9BQ65 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
USB1Q9BQ65 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
USB1Q9BQ65 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
USB1Q9BQ65 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
USB1Q9BQ65 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.48■□□□□ 0.55
USB1Q9BQ65 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
USB1Q9BQ65 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
USB1Q9BQ65 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
USB1Q9BQ65 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC18.47■□□□□ 0.55
USB1Q9BQ65 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
USB1Q9BQ65 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
USB1Q9BQ65 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC18.47■□□□□ 0.55
USB1Q9BQ65 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
USB1Q9BQ65 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
USB1Q9BQ65 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.47■□□□□ 0.55
USB1Q9BQ65 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
USB1Q9BQ65 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
USB1Q9BQ65 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
USB1Q9BQ65 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
USB1Q9BQ65 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
USB1Q9BQ65 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.47■□□□□ 0.55
USB1Q9BQ65 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC18.47■□□□□ 0.55
USB1Q9BQ65 DUX4L16-201ENST00000555130 1264 ntBASIC18.47■□□□□ 0.55
USB1Q9BQ65 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.47■□□□□ 0.55
USB1Q9BQ65 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
USB1Q9BQ65 AC010536.3-201ENST00000620306 533 ntBASIC18.47■□□□□ 0.55
USB1Q9BQ65 AC013268.1-206ENST00000638368 961 ntBASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms