Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NKX3-1Q99801 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NKX3-1Q99801 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NKX3-1Q99801 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.11■□□□□ 0.49
NKX3-1Q99801 UNC93B3-201ENST00000308076 687 ntBASIC18.11■□□□□ 0.49
NKX3-1Q99801 SNX3-202ENST00000349379 890 ntTSL 2 BASIC18.11■□□□□ 0.49
NKX3-1Q99801 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
NKX3-1Q99801 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NKX3-1Q99801 AP005435.1-201ENST00000529293 1178 ntBASIC18.11■□□□□ 0.49
NKX3-1Q99801 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC18.11■□□□□ 0.49
NKX3-1Q99801 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC18.11■□□□□ 0.49
NKX3-1Q99801 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NKX3-1Q99801 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
NKX3-1Q99801 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
NKX3-1Q99801 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
NKX3-1Q99801 ASL-203ENST00000380839 1765 ntTSL 5 BASIC18.11■□□□□ 0.49
NKX3-1Q99801 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
NKX3-1Q99801 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.11■□□□□ 0.49
NKX3-1Q99801 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
NKX3-1Q99801 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
NKX3-1Q99801 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
NKX3-1Q99801 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NKX3-1Q99801 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
NKX3-1Q99801 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
NKX3-1Q99801 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
NKX3-1Q99801 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
NKX3-1Q99801 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
NKX3-1Q99801 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NKX3-1Q99801 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
NKX3-1Q99801 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
NKX3-1Q99801 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NKX3-1Q99801 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NKX3-1Q99801 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NKX3-1Q99801 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.1■□□□□ 0.49
NKX3-1Q99801 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
NKX3-1Q99801 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC18.1■□□□□ 0.49
NKX3-1Q99801 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
NKX3-1Q99801 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
NKX3-1Q99801 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
NKX3-1Q99801 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC18.1■□□□□ 0.49
NKX3-1Q99801 PTMA-205ENST00000410064 814 ntTSL 2 BASIC18.1■□□□□ 0.49
NKX3-1Q99801 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
NKX3-1Q99801 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC18.1■□□□□ 0.49
NKX3-1Q99801 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC18.1■□□□□ 0.49
NKX3-1Q99801 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC18.1■□□□□ 0.49
NKX3-1Q99801 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
NKX3-1Q99801 SMUG1P1-201ENST00000590640 811 ntBASIC18.1■□□□□ 0.49
NKX3-1Q99801 AL138724.1-201ENST00000606771 1088 ntBASIC18.1■□□□□ 0.49
NKX3-1Q99801 AC011298.3-201ENST00000615796 283 ntBASIC18.1■□□□□ 0.49
NKX3-1Q99801 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
NKX3-1Q99801 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
NKX3-1Q99801 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.1■□□□□ 0.49
NKX3-1Q99801 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
NKX3-1Q99801 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
NKX3-1Q99801 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC18.09■□□□□ 0.49
NKX3-1Q99801 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NKX3-1Q99801 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NKX3-1Q99801 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
NKX3-1Q99801 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
NKX3-1Q99801 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
NKX3-1Q99801 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
NKX3-1Q99801 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
NKX3-1Q99801 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NKX3-1Q99801 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC18.09■□□□□ 0.49
NKX3-1Q99801 AL136162.1-201ENST00000607711 1078 ntBASIC18.09■□□□□ 0.49
NKX3-1Q99801 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NKX3-1Q99801 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
NKX3-1Q99801 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NKX3-1Q99801 AC112907.3-201ENST00000577781 2400 ntBASIC18.09■□□□□ 0.49
NKX3-1Q99801 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
NKX3-1Q99801 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
NKX3-1Q99801 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.49
NKX3-1Q99801 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.08■□□□□ 0.49
NKX3-1Q99801 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
NKX3-1Q99801 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
NKX3-1Q99801 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
NKX3-1Q99801 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
NKX3-1Q99801 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
NKX3-1Q99801 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
NKX3-1Q99801 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC18.08■□□□□ 0.49
NKX3-1Q99801 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
NKX3-1Q99801 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC18.08■□□□□ 0.48
NKX3-1Q99801 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
NKX3-1Q99801 NARF-205ENST00000412079 1760 ntTSL 5 BASIC18.08■□□□□ 0.48
NKX3-1Q99801 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
NKX3-1Q99801 AC006128.1-201ENST00000624704 1661 ntBASIC18.08■□□□□ 0.48
NKX3-1Q99801 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
NKX3-1Q99801 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
NKX3-1Q99801 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
NKX3-1Q99801 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
NKX3-1Q99801 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.07■□□□□ 0.48
NKX3-1Q99801 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
NKX3-1Q99801 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
NKX3-1Q99801 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NKX3-1Q99801 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
NKX3-1Q99801 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
NKX3-1Q99801 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
NKX3-1Q99801 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.07■□□□□ 0.48
NKX3-1Q99801 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
NKX3-1Q99801 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms