Protein–RNA interactions for Protein: Q99727

TIMP4, Metalloproteinase inhibitor 4, humanhuman

Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TIMP4Q99727 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TIMP4Q99727 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TIMP4Q99727 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TIMP4Q99727 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TIMP4Q99727 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TIMP4Q99727 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TIMP4Q99727 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.13■□□□□ 0.65
TIMP4Q99727 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TIMP4Q99727 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TIMP4Q99727 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TIMP4Q99727 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.12■□□□□ 0.65
TIMP4Q99727 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
TIMP4Q99727 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TIMP4Q99727 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TIMP4Q99727 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TIMP4Q99727 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.12■□□□□ 0.65
TIMP4Q99727 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.12■□□□□ 0.65
TIMP4Q99727 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
TIMP4Q99727 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.12■□□□□ 0.65
TIMP4Q99727 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TIMP4Q99727 TK2-208ENST00000545043 1120 ntTSL 2 BASIC19.12■□□□□ 0.65
TIMP4Q99727 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.12■□□□□ 0.65
TIMP4Q99727 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC19.12■□□□□ 0.65
TIMP4Q99727 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TIMP4Q99727 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
TIMP4Q99727 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TIMP4Q99727 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.12■□□□□ 0.65
TIMP4Q99727 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.12■□□□□ 0.65
TIMP4Q99727 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
TIMP4Q99727 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TIMP4Q99727 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TIMP4Q99727 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TIMP4Q99727 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
TIMP4Q99727 KRT18P20-201ENST00000548986 1279 ntBASIC19.11■□□□□ 0.65
TIMP4Q99727 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC19.11■□□□□ 0.65
TIMP4Q99727 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.11■□□□□ 0.65
TIMP4Q99727 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.11■□□□□ 0.65
TIMP4Q99727 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TIMP4Q99727 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TIMP4Q99727 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
TIMP4Q99727 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.1■□□□□ 0.65
TIMP4Q99727 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TIMP4Q99727 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TIMP4Q99727 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
TIMP4Q99727 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TIMP4Q99727 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TIMP4Q99727 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.1■□□□□ 0.65
TIMP4Q99727 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
TIMP4Q99727 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TIMP4Q99727 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TIMP4Q99727 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC19.1■□□□□ 0.65
TIMP4Q99727 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TIMP4Q99727 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.1■□□□□ 0.65
TIMP4Q99727 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.1■□□□□ 0.65
TIMP4Q99727 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.1■□□□□ 0.65
TIMP4Q99727 MYCNOS-205ENST00000641950 531 ntBASIC19.1■□□□□ 0.65
TIMP4Q99727 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
TIMP4Q99727 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.1■□□□□ 0.65
TIMP4Q99727 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TIMP4Q99727 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TIMP4Q99727 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TIMP4Q99727 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TIMP4Q99727 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TIMP4Q99727 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.1■□□□□ 0.65
TIMP4Q99727 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
TIMP4Q99727 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
TIMP4Q99727 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TIMP4Q99727 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.09■□□□□ 0.65
TIMP4Q99727 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.09■□□□□ 0.65
TIMP4Q99727 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.09■□□□□ 0.65
TIMP4Q99727 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.09■□□□□ 0.65
TIMP4Q99727 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TIMP4Q99727 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.09■□□□□ 0.65
TIMP4Q99727 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
TIMP4Q99727 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.09■□□□□ 0.65
TIMP4Q99727 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
TIMP4Q99727 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TIMP4Q99727 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
TIMP4Q99727 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TIMP4Q99727 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TIMP4Q99727 CROCCP5-201ENST00000436658 830 ntBASIC19.08■□□□□ 0.64
TIMP4Q99727 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TIMP4Q99727 PPP1R14BP3-201ENST00000509033 445 ntBASIC19.08■□□□□ 0.64
TIMP4Q99727 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.08■□□□□ 0.64
TIMP4Q99727 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
TIMP4Q99727 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC19.08■□□□□ 0.64
TIMP4Q99727 GXYLT1P5-201ENST00000614548 1189 ntBASIC19.08■□□□□ 0.64
TIMP4Q99727 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TIMP4Q99727 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TIMP4Q99727 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TIMP4Q99727 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TIMP4Q99727 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
TIMP4Q99727 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.08■□□□□ 0.64
TIMP4Q99727 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TIMP4Q99727 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TIMP4Q99727 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
TIMP4Q99727 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
TIMP4Q99727 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
TIMP4Q99727 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
TIMP4Q99727 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms