Protein–RNA interactions for Protein: Q96AA3

RFT1, Protein RFT1 homolog, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFT1Q96AA3 HES6-206ENST00000409574 738 ntTSL 2 BASIC18.38■□□□□ 0.53
RFT1Q96AA3 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RFT1Q96AA3 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RFT1Q96AA3 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RFT1Q96AA3 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.38■□□□□ 0.53
RFT1Q96AA3 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
RFT1Q96AA3 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
RFT1Q96AA3 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFT1Q96AA3 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RFT1Q96AA3 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RFT1Q96AA3 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.37■□□□□ 0.53
RFT1Q96AA3 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RFT1Q96AA3 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.37■□□□□ 0.53
RFT1Q96AA3 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.37■□□□□ 0.53
RFT1Q96AA3 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFT1Q96AA3 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC18.37■□□□□ 0.53
RFT1Q96AA3 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RFT1Q96AA3 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC18.37■□□□□ 0.53
RFT1Q96AA3 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
RFT1Q96AA3 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.37■□□□□ 0.53
RFT1Q96AA3 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFT1Q96AA3 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC18.37■□□□□ 0.53
RFT1Q96AA3 AP005212.1-201ENST00000581547 1997 ntBASIC18.37■□□□□ 0.53
RFT1Q96AA3 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFT1Q96AA3 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFT1Q96AA3 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFT1Q96AA3 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.37■□□□□ 0.53
RFT1Q96AA3 AFG3L1P-217ENST00000557444 2447 ntBASIC18.37■□□□□ 0.53
RFT1Q96AA3 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.37■□□□□ 0.53
RFT1Q96AA3 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.36■□□□□ 0.53
RFT1Q96AA3 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RFT1Q96AA3 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RFT1Q96AA3 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RFT1Q96AA3 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RFT1Q96AA3 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
RFT1Q96AA3 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
RFT1Q96AA3 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RFT1Q96AA3 DYM-203ENST00000442713 2147 ntTSL 2 BASIC18.36■□□□□ 0.53
RFT1Q96AA3 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC18.36■□□□□ 0.53
RFT1Q96AA3 AL049796.1-201ENST00000565336 1766 ntBASIC18.36■□□□□ 0.53
RFT1Q96AA3 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RFT1Q96AA3 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
RFT1Q96AA3 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC18.36■□□□□ 0.53
RFT1Q96AA3 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
RFT1Q96AA3 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
RFT1Q96AA3 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.36■□□□□ 0.53
RFT1Q96AA3 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
RFT1Q96AA3 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFT1Q96AA3 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.35■□□□□ 0.53
RFT1Q96AA3 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC18.35■□□□□ 0.53
RFT1Q96AA3 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFT1Q96AA3 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
RFT1Q96AA3 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC18.35■□□□□ 0.53
RFT1Q96AA3 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
RFT1Q96AA3 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC18.35■□□□□ 0.53
RFT1Q96AA3 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC18.35■□□□□ 0.53
RFT1Q96AA3 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RFT1Q96AA3 AC131281.2-201ENST00000520478 145 ntBASIC18.35■□□□□ 0.53
RFT1Q96AA3 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC18.35■□□□□ 0.53
RFT1Q96AA3 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC18.35■□□□□ 0.53
RFT1Q96AA3 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC18.35■□□□□ 0.53
RFT1Q96AA3 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.35■□□□□ 0.53
RFT1Q96AA3 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.35■□□□□ 0.53
RFT1Q96AA3 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFT1Q96AA3 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFT1Q96AA3 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RFT1Q96AA3 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC18.34■□□□□ 0.53
RFT1Q96AA3 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RFT1Q96AA3 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RFT1Q96AA3 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RFT1Q96AA3 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
RFT1Q96AA3 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC18.34■□□□□ 0.53
RFT1Q96AA3 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC18.34■□□□□ 0.53
RFT1Q96AA3 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC18.34■□□□□ 0.53
RFT1Q96AA3 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC18.34■□□□□ 0.53
RFT1Q96AA3 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RFT1Q96AA3 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
RFT1Q96AA3 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
RFT1Q96AA3 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RFT1Q96AA3 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC18.33■□□□□ 0.53
RFT1Q96AA3 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.33■□□□□ 0.53
RFT1Q96AA3 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.33■□□□□ 0.53
RFT1Q96AA3 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RFT1Q96AA3 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
RFT1Q96AA3 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
RFT1Q96AA3 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
RFT1Q96AA3 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC18.33■□□□□ 0.53
RFT1Q96AA3 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
RFT1Q96AA3 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.33■□□□□ 0.52
RFT1Q96AA3 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFT1Q96AA3 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC18.33■□□□□ 0.52
RFT1Q96AA3 SLC47A1P1-202ENST00000449666 945 ntBASIC18.33■□□□□ 0.52
RFT1Q96AA3 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC18.33■□□□□ 0.52
RFT1Q96AA3 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC18.33■□□□□ 0.52
RFT1Q96AA3 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC18.33■□□□□ 0.52
RFT1Q96AA3 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFT1Q96AA3 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.33■□□□□ 0.52
RFT1Q96AA3 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFT1Q96AA3 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RFT1Q96AA3 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms