Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
ATG4AQ8WYN0 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
ATG4AQ8WYN0 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
ATG4AQ8WYN0 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
ATG4AQ8WYN0 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
ATG4AQ8WYN0 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
ATG4AQ8WYN0 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
ATG4AQ8WYN0 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
ATG4AQ8WYN0 AC121338.2-201ENST00000622535 1744 ntBASIC21.6■■□□□ 1.05
ATG4AQ8WYN0 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.6■■□□□ 1.05
ATG4AQ8WYN0 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
ATG4AQ8WYN0 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
ATG4AQ8WYN0 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
ATG4AQ8WYN0 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
ATG4AQ8WYN0 MIR572-201ENST00000384983 95 ntBASIC21.6■■□□□ 1.05
ATG4AQ8WYN0 MIR939-201ENST00000401314 82 ntBASIC21.6■■□□□ 1.05
ATG4AQ8WYN0 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
ATG4AQ8WYN0 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
ATG4AQ8WYN0 AL391422.3-201ENST00000603791 2761 ntBASIC21.6■■□□□ 1.05
ATG4AQ8WYN0 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
ATG4AQ8WYN0 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
ATG4AQ8WYN0 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
ATG4AQ8WYN0 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.59■■□□□ 1.05
ATG4AQ8WYN0 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
ATG4AQ8WYN0 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.59■■□□□ 1.05
ATG4AQ8WYN0 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
ATG4AQ8WYN0 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
ATG4AQ8WYN0 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
ATG4AQ8WYN0 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
ATG4AQ8WYN0 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
ATG4AQ8WYN0 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
ATG4AQ8WYN0 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.59■■□□□ 1.05
ATG4AQ8WYN0 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
ATG4AQ8WYN0 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.59■■□□□ 1.05
ATG4AQ8WYN0 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
ATG4AQ8WYN0 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.59■■□□□ 1.05
ATG4AQ8WYN0 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
ATG4AQ8WYN0 AL031432.3-201ENST00000607698 485 ntBASIC21.59■■□□□ 1.05
ATG4AQ8WYN0 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.59■■□□□ 1.05
ATG4AQ8WYN0 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.59■■□□□ 1.05
ATG4AQ8WYN0 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
ATG4AQ8WYN0 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
ATG4AQ8WYN0 RASA4CP-201ENST00000424092 1398 ntBASIC21.59■■□□□ 1.05
ATG4AQ8WYN0 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
ATG4AQ8WYN0 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.05
ATG4AQ8WYN0 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
ATG4AQ8WYN0 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
ATG4AQ8WYN0 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.58■■□□□ 1.05
ATG4AQ8WYN0 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.58■■□□□ 1.05
ATG4AQ8WYN0 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.58■■□□□ 1.05
ATG4AQ8WYN0 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.58■■□□□ 1.05
ATG4AQ8WYN0 AL355001.2-201ENST00000620617 1191 ntBASIC21.58■■□□□ 1.05
ATG4AQ8WYN0 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
ATG4AQ8WYN0 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.58■■□□□ 1.04
ATG4AQ8WYN0 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
ATG4AQ8WYN0 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
ATG4AQ8WYN0 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
ATG4AQ8WYN0 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
ATG4AQ8WYN0 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
ATG4AQ8WYN0 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.57■■□□□ 1.04
ATG4AQ8WYN0 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC21.57■■□□□ 1.04
ATG4AQ8WYN0 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC21.57■■□□□ 1.04
ATG4AQ8WYN0 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.57■■□□□ 1.04
ATG4AQ8WYN0 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.57■■□□□ 1.04
ATG4AQ8WYN0 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
ATG4AQ8WYN0 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
ATG4AQ8WYN0 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
ATG4AQ8WYN0 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
ATG4AQ8WYN0 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
ATG4AQ8WYN0 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
ATG4AQ8WYN0 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
ATG4AQ8WYN0 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
ATG4AQ8WYN0 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
ATG4AQ8WYN0 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
ATG4AQ8WYN0 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.56■■□□□ 1.04
ATG4AQ8WYN0 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.56■■□□□ 1.04
ATG4AQ8WYN0 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.56■■□□□ 1.04
ATG4AQ8WYN0 AL136967.2-201ENST00000623968 743 ntBASIC21.56■■□□□ 1.04
ATG4AQ8WYN0 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
ATG4AQ8WYN0 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
ATG4AQ8WYN0 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
ATG4AQ8WYN0 GABARAPL3-202ENST00000624044 1851 ntBASIC21.56■■□□□ 1.04
ATG4AQ8WYN0 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
ATG4AQ8WYN0 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.56■■□□□ 1.04
ATG4AQ8WYN0 PCDHAC2-203ENST00000615316 3011 ntBASIC21.55■■□□□ 1.04
ATG4AQ8WYN0 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
ATG4AQ8WYN0 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
ATG4AQ8WYN0 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
ATG4AQ8WYN0 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
ATG4AQ8WYN0 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
ATG4AQ8WYN0 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.55■■□□□ 1.04
ATG4AQ8WYN0 AC091305.1-201ENST00000479476 895 ntBASIC21.55■■□□□ 1.04
ATG4AQ8WYN0 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.55■■□□□ 1.04
ATG4AQ8WYN0 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
ATG4AQ8WYN0 AC027702.1-201ENST00000563810 1770 ntBASIC21.55■■□□□ 1.04
ATG4AQ8WYN0 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
ATG4AQ8WYN0 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
ATG4AQ8WYN0 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
ATG4AQ8WYN0 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
ATG4AQ8WYN0 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms