Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 PBX1-209ENST00000485769 834 ntTSL 2 BASIC23.26■■□□□ 1.31
CCDC60Q8IWA6 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC23.26■■□□□ 1.31
CCDC60Q8IWA6 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC23.26■■□□□ 1.31
CCDC60Q8IWA6 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC23.26■■□□□ 1.31
CCDC60Q8IWA6 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
CCDC60Q8IWA6 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
CCDC60Q8IWA6 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC23.25■■□□□ 1.31
CCDC60Q8IWA6 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC60Q8IWA6 AC010980.2-201ENST00000587099 1412 ntBASIC23.25■■□□□ 1.31
CCDC60Q8IWA6 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC60Q8IWA6 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC23.25■■□□□ 1.31
CCDC60Q8IWA6 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC60Q8IWA6 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC60Q8IWA6 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
CCDC60Q8IWA6 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
CCDC60Q8IWA6 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC23.25■■□□□ 1.31
CCDC60Q8IWA6 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC23.25■■□□□ 1.31
CCDC60Q8IWA6 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC60Q8IWA6 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC60Q8IWA6 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC23.25■■□□□ 1.31
CCDC60Q8IWA6 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC23.25■■□□□ 1.31
CCDC60Q8IWA6 FBXW4P1-201ENST00000426721 2239 ntBASIC23.25■■□□□ 1.31
CCDC60Q8IWA6 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC23.25■■□□□ 1.31
CCDC60Q8IWA6 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
CCDC60Q8IWA6 STK25-234ENST00000535007 2459 ntTSL 2 BASIC23.24■■□□□ 1.31
CCDC60Q8IWA6 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC60Q8IWA6 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC23.24■■□□□ 1.31
CCDC60Q8IWA6 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC60Q8IWA6 AC073210.2-201ENST00000430369 194 ntBASIC23.24■■□□□ 1.31
CCDC60Q8IWA6 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC23.24■■□□□ 1.31
CCDC60Q8IWA6 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC23.24■■□□□ 1.31
CCDC60Q8IWA6 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC23.24■■□□□ 1.31
CCDC60Q8IWA6 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
CCDC60Q8IWA6 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC23.24■■□□□ 1.31
CCDC60Q8IWA6 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
CCDC60Q8IWA6 TUB-203ENST00000534099 1759 ntTSL 2 BASIC23.24■■□□□ 1.31
CCDC60Q8IWA6 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC23.24■■□□□ 1.31
CCDC60Q8IWA6 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC60Q8IWA6 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC60Q8IWA6 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC23.23■■□□□ 1.31
CCDC60Q8IWA6 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC60Q8IWA6 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC60Q8IWA6 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC23.23■■□□□ 1.31
CCDC60Q8IWA6 PTPA-214ENST00000423100 988 ntTSL 2 BASIC23.23■■□□□ 1.31
CCDC60Q8IWA6 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC23.23■■□□□ 1.31
CCDC60Q8IWA6 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC60Q8IWA6 FAM21FP-204ENST00000608637 956 ntBASIC23.23■■□□□ 1.31
CCDC60Q8IWA6 AC133041.1-202ENST00000642053 222 ntBASIC23.23■■□□□ 1.31
CCDC60Q8IWA6 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC60Q8IWA6 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC60Q8IWA6 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC60Q8IWA6 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC23.22■■□□□ 1.31
CCDC60Q8IWA6 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC60Q8IWA6 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC23.22■■□□□ 1.31
CCDC60Q8IWA6 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC60Q8IWA6 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC60Q8IWA6 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC60Q8IWA6 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC60Q8IWA6 BX276092.2-201ENST00000417668 665 ntBASIC23.22■■□□□ 1.31
CCDC60Q8IWA6 CASP6-205ENST00000505486 538 ntTSL 4 BASIC23.22■■□□□ 1.31
CCDC60Q8IWA6 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC23.22■■□□□ 1.31
CCDC60Q8IWA6 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC23.22■■□□□ 1.31
CCDC60Q8IWA6 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC23.22■■□□□ 1.31
CCDC60Q8IWA6 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC23.22■■□□□ 1.31
CCDC60Q8IWA6 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC23.22■■□□□ 1.31
CCDC60Q8IWA6 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC23.22■■□□□ 1.31
CCDC60Q8IWA6 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC60Q8IWA6 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC60Q8IWA6 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC60Q8IWA6 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC23.22■■□□□ 1.31
CCDC60Q8IWA6 AC244015.2-201ENST00000616358 1861 ntBASIC23.22■■□□□ 1.31
CCDC60Q8IWA6 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 DYM-203ENST00000442713 2147 ntTSL 2 BASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 PPP1R14BP2-201ENST00000426284 444 ntBASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 RGMA-211ENST00000557420 989 ntTSL 3 BASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 MIR4758-201ENST00000577688 71 ntBASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
CCDC60Q8IWA6 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC60Q8IWA6 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC60Q8IWA6 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC60Q8IWA6 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC23.2■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms