Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CSPG4Q6UVK1 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 KRT17P3-201ENST00000420566 1262 ntBASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 POM121L13P-201ENST00000422362 380 ntBASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 AL589743.5-201ENST00000616611 1050 ntBASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CSPG4Q6UVK1 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CSPG4Q6UVK1 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CSPG4Q6UVK1 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC17.24■□□□□ 0.35
CSPG4Q6UVK1 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC17.24■□□□□ 0.35
CSPG4Q6UVK1 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC17.24■□□□□ 0.35
CSPG4Q6UVK1 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
CSPG4Q6UVK1 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.24■□□□□ 0.35
CSPG4Q6UVK1 AC100791.3-201ENST00000617619 330 ntBASIC17.24■□□□□ 0.35
CSPG4Q6UVK1 AC093323.1-202ENST00000635031 2045 ntBASIC17.24■□□□□ 0.35
CSPG4Q6UVK1 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CSPG4Q6UVK1 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC17.24■□□□□ 0.35
CSPG4Q6UVK1 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC17.24■□□□□ 0.35
CSPG4Q6UVK1 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CSPG4Q6UVK1 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CSPG4Q6UVK1 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CSPG4Q6UVK1 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC17.24■□□□□ 0.35
CSPG4Q6UVK1 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC17.24■□□□□ 0.35
CSPG4Q6UVK1 HLA-B-256ENST00000639848 1089 ntBASIC17.24■□□□□ 0.35
CSPG4Q6UVK1 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CSPG4Q6UVK1 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CSPG4Q6UVK1 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CSPG4Q6UVK1 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CSPG4Q6UVK1 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CSPG4Q6UVK1 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC17.23■□□□□ 0.35
CSPG4Q6UVK1 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CSPG4Q6UVK1 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CSPG4Q6UVK1 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CSPG4Q6UVK1 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CSPG4Q6UVK1 RCN1P1-201ENST00000400413 996 ntBASIC17.23■□□□□ 0.35
CSPG4Q6UVK1 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC17.23■□□□□ 0.35
CSPG4Q6UVK1 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CSPG4Q6UVK1 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.23■□□□□ 0.35
CSPG4Q6UVK1 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC17.23■□□□□ 0.35
CSPG4Q6UVK1 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CSPG4Q6UVK1 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC17.23■□□□□ 0.35
CSPG4Q6UVK1 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC17.23■□□□□ 0.35
CSPG4Q6UVK1 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CSPG4Q6UVK1 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CSPG4Q6UVK1 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.23■□□□□ 0.35
CSPG4Q6UVK1 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CSPG4Q6UVK1 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
CSPG4Q6UVK1 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.22■□□□□ 0.35
CSPG4Q6UVK1 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CSPG4Q6UVK1 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC17.22■□□□□ 0.35
CSPG4Q6UVK1 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CSPG4Q6UVK1 SOX15-203ENST00000570788 1093 ntBASIC17.22■□□□□ 0.35
CSPG4Q6UVK1 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC17.22■□□□□ 0.35
CSPG4Q6UVK1 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CSPG4Q6UVK1 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC17.22■□□□□ 0.35
CSPG4Q6UVK1 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CSPG4Q6UVK1 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC17.22■□□□□ 0.35
CSPG4Q6UVK1 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
CSPG4Q6UVK1 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CSPG4Q6UVK1 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.22■□□□□ 0.35
CSPG4Q6UVK1 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.22■□□□□ 0.35
CSPG4Q6UVK1 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.22■□□□□ 0.35
CSPG4Q6UVK1 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CSPG4Q6UVK1 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CSPG4Q6UVK1 GCA-201ENST00000233612 1694 ntTSL 2 BASIC17.22■□□□□ 0.35
CSPG4Q6UVK1 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
CSPG4Q6UVK1 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC17.22■□□□□ 0.35
CSPG4Q6UVK1 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
CSPG4Q6UVK1 ARMC10P1-201ENST00000313754 855 ntBASIC17.21■□□□□ 0.35
CSPG4Q6UVK1 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CSPG4Q6UVK1 NME6-213ENST00000451657 871 ntTSL 2 BASIC17.21■□□□□ 0.35
CSPG4Q6UVK1 RN7SL471P-201ENST00000580476 299 ntBASIC17.21■□□□□ 0.35
CSPG4Q6UVK1 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CSPG4Q6UVK1 AC133561.5-201ENST00000635547 218 ntBASIC17.21■□□□□ 0.35
CSPG4Q6UVK1 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CSPG4Q6UVK1 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CSPG4Q6UVK1 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CSPG4Q6UVK1 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms