Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC18.28■□□□□ 0.52
CX3CR1P49238 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
CX3CR1P49238 RNF146-206ENST00000480444 843 ntTSL 2 BASIC18.28■□□□□ 0.52
CX3CR1P49238 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC18.28■□□□□ 0.52
CX3CR1P49238 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC18.28■□□□□ 0.52
CX3CR1P49238 TPRG1LP1-201ENST00000598702 760 ntBASIC18.28■□□□□ 0.52
CX3CR1P49238 NME4-211ENST00000620944 1193 ntTSL 2 BASIC18.28■□□□□ 0.52
CX3CR1P49238 MIR6084-201ENST00000622012 110 ntBASIC18.28■□□□□ 0.52
CX3CR1P49238 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CX3CR1P49238 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.28■□□□□ 0.52
CX3CR1P49238 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CX3CR1P49238 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CX3CR1P49238 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CX3CR1P49238 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
CX3CR1P49238 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CX3CR1P49238 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CX3CR1P49238 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.28■□□□□ 0.52
CX3CR1P49238 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CX3CR1P49238 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CX3CR1P49238 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC18.28■□□□□ 0.52
CX3CR1P49238 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CX3CR1P49238 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CX3CR1P49238 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC18.27■□□□□ 0.52
CX3CR1P49238 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CX3CR1P49238 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.27■□□□□ 0.52
CX3CR1P49238 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CX3CR1P49238 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.52
CX3CR1P49238 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
CX3CR1P49238 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CX3CR1P49238 MTURN-203ENST00000409688 843 ntTSL 2 BASIC18.27■□□□□ 0.52
CX3CR1P49238 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CX3CR1P49238 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC18.27■□□□□ 0.52
CX3CR1P49238 AC005837.3-201ENST00000612163 286 ntBASIC18.27■□□□□ 0.52
CX3CR1P49238 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC18.27■□□□□ 0.52
CX3CR1P49238 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CX3CR1P49238 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CX3CR1P49238 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CX3CR1P49238 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CX3CR1P49238 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CX3CR1P49238 MFF-207ENST00000409565 1548 ntTSL 2 BASIC18.27■□□□□ 0.51
CX3CR1P49238 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.51
CX3CR1P49238 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.51
CX3CR1P49238 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.27■□□□□ 0.51
CX3CR1P49238 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CX3CR1P49238 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CX3CR1P49238 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CX3CR1P49238 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.26■□□□□ 0.51
CX3CR1P49238 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC18.26■□□□□ 0.51
CX3CR1P49238 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CX3CR1P49238 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC18.26■□□□□ 0.51
CX3CR1P49238 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CX3CR1P49238 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CX3CR1P49238 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC18.26■□□□□ 0.51
CX3CR1P49238 AC105265.2-201ENST00000467189 838 ntBASIC18.26■□□□□ 0.51
CX3CR1P49238 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC18.26■□□□□ 0.51
CX3CR1P49238 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CX3CR1P49238 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CX3CR1P49238 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CX3CR1P49238 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
CX3CR1P49238 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
CX3CR1P49238 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.26■□□□□ 0.51
CX3CR1P49238 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.26■□□□□ 0.51
CX3CR1P49238 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.26■□□□□ 0.51
CX3CR1P49238 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC18.25■□□□□ 0.51
CX3CR1P49238 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CX3CR1P49238 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
CX3CR1P49238 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.25■□□□□ 0.51
CX3CR1P49238 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.25■□□□□ 0.51
CX3CR1P49238 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CX3CR1P49238 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CX3CR1P49238 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.25■□□□□ 0.51
CX3CR1P49238 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
CX3CR1P49238 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
CX3CR1P49238 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CX3CR1P49238 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC18.25■□□□□ 0.51
CX3CR1P49238 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
CX3CR1P49238 EEF1DP3-203ENST00000566025 782 ntBASIC18.25■□□□□ 0.51
CX3CR1P49238 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
CX3CR1P49238 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
CX3CR1P49238 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CX3CR1P49238 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
CX3CR1P49238 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
CX3CR1P49238 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
CX3CR1P49238 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.25■□□□□ 0.51
CX3CR1P49238 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
CX3CR1P49238 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CX3CR1P49238 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CX3CR1P49238 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CX3CR1P49238 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CX3CR1P49238 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
CX3CR1P49238 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
CX3CR1P49238 IRS3P-201ENST00000223076 1006 ntBASIC18.24■□□□□ 0.51
CX3CR1P49238 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CX3CR1P49238 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CX3CR1P49238 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CX3CR1P49238 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
CX3CR1P49238 AC053503.5-201ENST00000601508 636 ntBASIC18.24■□□□□ 0.51
CX3CR1P49238 CPT2-209ENST00000636935 803 ntTSL 5 BASIC18.24■□□□□ 0.51
CX3CR1P49238 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
CX3CR1P49238 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC18.24■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms