Protein–RNA interactions for Protein: P46779

RPL28, 60S ribosomal protein L28, humanhuman

Known RBP Predictions only

Length 137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28P46779 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC13.71□□□□□ -0.21
RPL28P46779 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RPL28P46779 AL117332.1-201ENST00000622628 974 ntBASIC13.71□□□□□ -0.21
RPL28P46779 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC13.71□□□□□ -0.21
RPL28P46779 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
RPL28P46779 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RPL28P46779 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
RPL28P46779 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
RPL28P46779 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
RPL28P46779 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC13.71□□□□□ -0.22
RPL28P46779 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
RPL28P46779 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC13.71□□□□□ -0.22
RPL28P46779 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.71□□□□□ -0.22
RPL28P46779 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC13.71□□□□□ -0.22
RPL28P46779 AIRN-201ENST00000601203 4374 ntBASIC13.71□□□□□ -0.22
RPL28P46779 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
RPL28P46779 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC13.7□□□□□ -0.22
RPL28P46779 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC13.7□□□□□ -0.22
RPL28P46779 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RPL28P46779 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
RPL28P46779 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
RPL28P46779 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC13.7□□□□□ -0.22
RPL28P46779 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RPL28P46779 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RPL28P46779 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
RPL28P46779 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
RPL28P46779 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
RPL28P46779 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC13.7□□□□□ -0.22
RPL28P46779 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC13.7□□□□□ -0.22
RPL28P46779 AC026471.6-201ENST00000622954 1905 ntBASIC13.7□□□□□ -0.22
RPL28P46779 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC13.7□□□□□ -0.22
RPL28P46779 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
RPL28P46779 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC13.69□□□□□ -0.22
RPL28P46779 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC13.69□□□□□ -0.22
RPL28P46779 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
RPL28P46779 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC13.69□□□□□ -0.22
RPL28P46779 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC13.69□□□□□ -0.22
RPL28P46779 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC13.69□□□□□ -0.22
RPL28P46779 DUX4L4-201ENST00000566884 1269 ntBASIC13.69□□□□□ -0.22
RPL28P46779 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC13.69□□□□□ -0.22
RPL28P46779 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
RPL28P46779 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
RPL28P46779 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
RPL28P46779 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC13.69□□□□□ -0.22
RPL28P46779 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC13.69□□□□□ -0.22
RPL28P46779 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
RPL28P46779 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC13.69□□□□□ -0.22
RPL28P46779 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC13.69□□□□□ -0.22
RPL28P46779 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC13.69□□□□□ -0.22
RPL28P46779 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC13.69□□□□□ -0.22
RPL28P46779 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
RPL28P46779 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RPL28P46779 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RPL28P46779 AC009102.2-201ENST00000606772 1639 ntBASIC13.68□□□□□ -0.22
RPL28P46779 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC13.68□□□□□ -0.22
RPL28P46779 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RPL28P46779 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RPL28P46779 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC13.68□□□□□ -0.22
RPL28P46779 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
RPL28P46779 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC13.68□□□□□ -0.22
RPL28P46779 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RPL28P46779 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
RPL28P46779 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RPL28P46779 AL356441.2-201ENST00000443009 864 ntBASIC13.68□□□□□ -0.22
RPL28P46779 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC13.68□□□□□ -0.22
RPL28P46779 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC13.68□□□□□ -0.22
RPL28P46779 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC13.68□□□□□ -0.22
RPL28P46779 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC13.68□□□□□ -0.22
RPL28P46779 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
RPL28P46779 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC13.68□□□□□ -0.22
RPL28P46779 AC241377.3-202ENST00000626088 1088 ntBASIC13.68□□□□□ -0.22
RPL28P46779 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC13.68□□□□□ -0.22
RPL28P46779 AC241585.3-202ENST00000628937 1088 ntBASIC13.68□□□□□ -0.22
RPL28P46779 AC245100.8-202ENST00000629247 1058 ntBASIC13.68□□□□□ -0.22
RPL28P46779 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC13.68□□□□□ -0.22
RPL28P46779 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
RPL28P46779 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC13.68□□□□□ -0.22
RPL28P46779 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RPL28P46779 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
RPL28P46779 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
RPL28P46779 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
RPL28P46779 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC13.67□□□□□ -0.22
RPL28P46779 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
RPL28P46779 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC13.67□□□□□ -0.22
RPL28P46779 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
RPL28P46779 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
RPL28P46779 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RPL28P46779 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RPL28P46779 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RPL28P46779 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC13.67□□□□□ -0.22
RPL28P46779 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
RPL28P46779 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RPL28P46779 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
RPL28P46779 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
RPL28P46779 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC13.67□□□□□ -0.22
RPL28P46779 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC13.67□□□□□ -0.22
RPL28P46779 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC13.67□□□□□ -0.22
RPL28P46779 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
RPL28P46779 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
RPL28P46779 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC13.67□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms