Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CKS2P33552 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CKS2P33552 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CKS2P33552 AC074183.2-201ENST00000623112 922 ntBASIC15.32■□□□□ 0.04
CKS2P33552 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC15.32■□□□□ 0.04
CKS2P33552 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CKS2P33552 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CKS2P33552 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CKS2P33552 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
CKS2P33552 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
CKS2P33552 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC15.32■□□□□ 0.04
CKS2P33552 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CKS2P33552 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CKS2P33552 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC15.31■□□□□ 0.04
CKS2P33552 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CKS2P33552 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CKS2P33552 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CKS2P33552 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CKS2P33552 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC15.31■□□□□ 0.04
CKS2P33552 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC15.31■□□□□ 0.04
CKS2P33552 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC15.31■□□□□ 0.04
CKS2P33552 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CKS2P33552 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CKS2P33552 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CKS2P33552 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC15.31■□□□□ 0.04
CKS2P33552 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CKS2P33552 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CKS2P33552 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CKS2P33552 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CKS2P33552 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CKS2P33552 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
CKS2P33552 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CKS2P33552 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC15.31■□□□□ 0.04
CKS2P33552 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CKS2P33552 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC15.31■□□□□ 0.04
CKS2P33552 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CKS2P33552 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CKS2P33552 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CKS2P33552 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC15.31■□□□□ 0.04
CKS2P33552 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CKS2P33552 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CKS2P33552 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CKS2P33552 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CKS2P33552 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC15.31■□□□□ 0.04
CKS2P33552 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CKS2P33552 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CKS2P33552 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
CKS2P33552 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CKS2P33552 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CKS2P33552 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CKS2P33552 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CKS2P33552 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CKS2P33552 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CKS2P33552 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
CKS2P33552 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC15.3■□□□□ 0.04
CKS2P33552 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC15.3■□□□□ 0.04
CKS2P33552 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC15.3■□□□□ 0.04
CKS2P33552 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CKS2P33552 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC15.3■□□□□ 0.04
CKS2P33552 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC15.3■□□□□ 0.04
CKS2P33552 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CKS2P33552 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
CKS2P33552 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CKS2P33552 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CKS2P33552 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CKS2P33552 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC15.29■□□□□ 0.04
CKS2P33552 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC15.29■□□□□ 0.04
CKS2P33552 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CKS2P33552 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CKS2P33552 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC15.29■□□□□ 0.04
CKS2P33552 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC15.29■□□□□ 0.04
CKS2P33552 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CKS2P33552 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CKS2P33552 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC15.29■□□□□ 0.04
CKS2P33552 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CKS2P33552 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CKS2P33552 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CKS2P33552 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CKS2P33552 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CKS2P33552 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CKS2P33552 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CKS2P33552 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC15.28■□□□□ 0.04
CKS2P33552 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CKS2P33552 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CKS2P33552 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CKS2P33552 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CKS2P33552 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CKS2P33552 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC15.28■□□□□ 0.04
CKS2P33552 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC15.28■□□□□ 0.04
CKS2P33552 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC15.28■□□□□ 0.04
CKS2P33552 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CKS2P33552 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CKS2P33552 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC15.28■□□□□ 0.04
CKS2P33552 AC009102.2-201ENST00000606772 1639 ntBASIC15.28■□□□□ 0.04
CKS2P33552 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CKS2P33552 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CKS2P33552 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC15.27■□□□□ 0.04
CKS2P33552 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
CKS2P33552 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
CKS2P33552 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms